RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 CHRNA10Q9GZZ6 450 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 TMEM9BQ9NQ34 198 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 ASIC5Q9NY37 505 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 MAPRE3Q9UPY8 281 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 PCDHGA4Q9Y5G9 962 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 CAPN7Q9Y6W3 813 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 ARHGEF17Q96PE2 2063 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-209ENST00000597423 SLC9B1P1A6NJY1 282 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 PSMD12O00232 456 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-209ENST00000597423 TOX3O15405 576 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-209ENST00000597423 LCMT2O60294 686 aaKnown RBP14.59□□□□□ -0.07
TRIM28-209ENST00000597423 SRPX2O60687 465 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-209ENST00000597423 RASSF9O75901 435 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 ZBTB11O95625 1053 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-209ENST00000597423 THRAP10827 490 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 CKMT2P17540 419 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 CD1CP29017 333 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 BCL6P41182 706 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 NBL1P41271 181 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 RAP1GDS1P52306 607 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 RPL38P63173 70 aaKnown RBP14.59□□□□□ -0.07
TRIM28-209ENST00000597423 SPEM2Q0P670 501 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 RFTN2Q52LD8 501 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-209ENST00000597423 TMTC4Q5T4D3 741 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 IL23RQ5VWK5 629 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 KHDRBS2Q5VWX1 349 aaKnown RBP14.59□□□□□ -0.07
TRIM28-209ENST00000597423 NKAIN2Q5VXU1 208 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 FCRL6Q6DN72 434 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 FAM92BQ6ZTR7 304 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 ZNF771Q7L3S4 317 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-209ENST00000597423 SPRED1Q7Z699 444 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 ASPGQ86U10 573 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 KMT5CQ86Y97 462 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 C19orf47Q8N9M1 422 aaKnown RBP14.59□□□□□ -0.07
TRIM28-209ENST00000597423 RGMAQ96B86 450 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 ZBTB18Q99592 522 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 CCDC3Q9BQI4 270 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 SPNS1Q9H2V7 528 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 PDE7BQ9NP56 450 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 SEMA4GQ9NTN9 838 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 SIRT5Q9NXA8 310 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 KLHL20Q9Y2M5 609 aa14.59□□□□□ -0.07
TRIM28-209ENST00000597423 ARHGAP10A1A4S6 786 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 CPNE6O95741 557 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 SLC35G6P0C7Q6 338 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 MYF5P13349 255 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 PRDX6P30041 224 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 MRPL19P49406 292 aaKnown RBP14.58□□□□□ -0.08
TRIM28-209ENST00000597423 ACADVLP49748 655 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 RASSF2P50749 326 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 CYP4F2P78329 520 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 KLF10Q13118 480 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 KIAA0040Q15053 153 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 SF3A2Q15428 464 aaKnown RBP14.58□□□□□ -0.08
TRIM28-209ENST00000597423 ZIC1Q15915 447 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 PDCD4Q53EL6 469 aaKnown RBP14.58□□□□□ -0.08
TRIM28-209ENST00000597423 TMEM198Q66K66 360 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 NOXRED1Q6NXP6 359 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 GUSBP11Q6P575 273 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 TMEM71Q6P5X7 295 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 USP53Q70EK8 1073 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 PLD3Q8IV08 490 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 ANKRD53Q8N9V6 530 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 WDR48Q8TAF3 677 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 IFI44Q8TCB0 444 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 CREB3L4Q8TEY5 395 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 CHTF18Q8WVB6 975 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 N4BP2L2Q92802 583 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-209ENST00000597423 PRR11Q96HE9 360 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-209ENST00000597423 NSL1Q96IY1 281 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 CNDP2Q96KP4 475 aaKnown RBP14.58□□□□□ -0.08
TRIM28-209ENST00000597423 CDC6Q99741 560 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 MAP3K3Q99759 626 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 EDEM2Q9BV94 578 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 CCDC106Q9BWC9 280 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 MS4A8Q9BY19 250 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 ROGDIQ9GZN7 287 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 REXO4Q9GZR2 422 aaKnown RBP14.58□□□□□ -0.08
TRIM28-209ENST00000597423 OR51B5Q9H339 312 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 LRRN3Q9H3W5 708 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 SDR39U1Q9NRG7 319 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-209ENST00000597423 AIG1Q9NVV5 245 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 FTSJ1Q9UET6 329 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 PILRAQ9UKJ1 303 aa14.58□□□□□ -0.08
TRIM28-209ENST00000597423 WBP11Q9Y2W2 641 aaKnown RBP14.58□□□□□ -0.08
TRIM28-209ENST00000597423 COPG1Q9Y678 874 aaKnown RBP14.58□□□□□ -0.08
TRIM28-209ENST00000597423 PI4KAP42356 2102 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 A0A088AWK7 358 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 A0A0J9YVX5 310 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 LRIT2A6NDA9 550 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 ZSCAN9O15535 394 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-209ENST00000597423 NDUFS4O43181 175 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 HNRNPCL1O60812 293 aaKnown RBP14.57□□□□□ -0.08
TRIM28-209ENST00000597423 SLC22A3O75751 556 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 C9P02748 559 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 GP1BAP07359 652 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 PVRP15151 417 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 ST6GAL1P15907 406 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 ZNF10P21506 573 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-209ENST00000597423 ASMTP46597 345 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms