RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 DNAJC11Q9NVH1 559 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 ADPRHL2Q9NX46 363 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 ERVK13-1Q9NX77 482 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 C5orf42Q9H799 3197 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 YY2O15391 372 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 PRAMEF4O60810 478 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 WBP4O75554 376 aaKnown RBP14.74□□□□□ -0.05
UPF1-204ENST00000596842 SPNP16150 400 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 SERPINA4P29622 427 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 PTGS2P35354 604 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 PREPP48147 710 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 PRAMEF9Q5VWM5 478 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 ZZZ3Q8IYH5 903 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 USP7Q93009 1102 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 YIPF6Q96EC8 236 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 SLC6A14Q9UN76 642 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 A0A1W2PQ72 361 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 KPNA5O15131 536 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 PCDH7O60245 1069 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 ALOX5P09917 674 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 ETFAP13804 333 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 MRPL19P49406 292 aaKnown RBP14.74□□□□□ -0.05
UPF1-204ENST00000596842 TUBA1BP68363 451 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 VEPH1Q14D04 833 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 PLEKHG6Q3KR16 790 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 ARMCX4Q5H9R4 360 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 SYT6Q5T7P8 510 aaPredicted RBP14.74□□□□□ -0.05
UPF1-204ENST00000596842 TUBA1AQ71U36 451 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 CHPFQ8IZ52 775 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 LILRA3Q8N6C8 439 aaPredicted RBP14.74□□□□□ -0.05
UPF1-204ENST00000596842 GALNT6Q8NCL4 622 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 OR4A15Q8NGL6 344 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 HTATIP2Q9BUP3 242 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 BRD9Q9H8M2 597 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 STARD7Q9NQZ5 370 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 TMEM161AQ9NX61 479 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 STMN3Q9NZ72 180 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 DNMT3BQ9UBC3 853 aaKnown RBP14.74□□□□□ -0.05
UPF1-204ENST00000596842 PATJQ8NI35 1801 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 ZDHHC11BP0C7U3 371 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 ITGAMP11215 1152 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 PPP5CP53041 499 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 MEF2AQ02078 507 aaPredicted RBP14.73□□□□□ -0.05
UPF1-204ENST00000596842 ATAD3BQ5T9A4 648 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 CPTPQ5TA50 214 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 DESI1Q6ICB0 168 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 TSPYL5Q86VY4 417 aaPredicted RBP14.73□□□□□ -0.05
UPF1-204ENST00000596842 TAGAPQ8N103 731 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 RHOXF1Q8NHV9 184 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 FERD3LQ96RJ6 166 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 ZNF717Q9BY31 904 aaPredicted RBP14.73□□□□□ -0.05
UPF1-204ENST00000596842 NUAK2Q9H093 628 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 SGK2Q9HBY8 427 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 EHD3Q9NZN3 535 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 SCN10AQ9Y5Y9 1956 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 TRBV5-3A0A0A0MS03 114 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 E7EQ34 232 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 FAM227AF5H4B4 570 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 CRYZL1O95825 349 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 AMD1P17707 334 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 SLC19A1P41440 591 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 MXD1Q05195 221 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 ST3GAL4Q11206 333 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 SMARCB1Q12824 385 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 IL18R1Q13478 541 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 CRTC1Q6UUV9 634 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.73□□□□□ -0.05
UPF1-204ENST00000596842 CALHM3Q86XJ0 350 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 AMER2Q8N7J2 671 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 PCSK9Q8NBP7 692 aaKnown RBP14.73□□□□□ -0.05
UPF1-204ENST00000596842 OR10G2Q8NGC3 310 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 SLC38A4Q969I6 547 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 VPS29Q9UBQ0 182 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 RAB23Q9ULC3 237 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 CHD5Q8TDI0 1954 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 GFRA2O00451 464 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 C9P02748 559 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 CD70P32970 193 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 GRK5P34947 590 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 FEN1P39748 380 aaKnown RBP14.73□□□□□ -0.05
UPF1-204ENST00000596842 SELENBP1Q13228 472 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 STARD3Q14849 445 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 CCSMST1Q4G0I0 132 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 SYTL3Q4VX76 610 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 DGKKQ5KSL6 1271 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 PRSS48Q7RTY5 328 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 PLD4Q96BZ4 506 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 CDK5RAP1Q96SZ6 601 aaKnown RBP14.73□□□□□ -0.05
UPF1-204ENST00000596842 CCNB1IP1Q9NPC3 277 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 MYO10Q9HD67 2058 aa14.73□□□□□ -0.05
UPF1-204ENST00000596842 SSX4O60224 188 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 IGSF6O95976 241 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 PRPS1L1P21108 318 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 TAB1Q15750 504 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 CAPN13Q6MZZ7 669 aaPredicted RBP14.72□□□□□ -0.05
UPF1-204ENST00000596842 ZNF852Q6ZMS4 543 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 PTOV1Q86YD1 416 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 CMTM8Q8IZV2 173 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 ZNF675Q8TD23 568 aa14.72□□□□□ -0.05
UPF1-204ENST00000596842 ZNF556Q9HAH1 456 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms