RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 METTL27Q8N6F8 245 aaPredicted RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 SNX31Q8N9S9 440 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 ZNF740Q8NDX6 193 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 TRPV3Q8NET8 790 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 TTLQ8NG68 377 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 ACMSDQ8TDX5 336 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 ADAMTS17Q8TE56 1095 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 APOBEC4Q8WW27 367 aaKnown RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 EXTL1Q92935 676 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 COL26A1Q96A83 441 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 ESAMQ96AP7 390 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 SEC16BQ96JE7 1060 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 ARHGAP9Q9BRR9 750 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 GEMIN8Q9NWZ8 242 aaKnown RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 COPG2Q9UBF2 871 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 OPTCQ9UBM4 332 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 ZNF282Q9UDV7 671 aaPredicted RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 TMCO1Q9UM00 188 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 PTRH2Q9Y3E5 179 aaKnown RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 MAU2Q9Y6X3 613 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 H0YIG0 161 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 K7EPI3 171 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 TK2O00142 265 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 FOXS1O43638 330 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 CNOT3O75175 753 aaKnown RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 NSA2O95478 260 aaKnown RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 SHBGP04278 402 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 ATXN8OSP0DMR3 200 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 FBLP22087 321 aaKnown RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 VARSP26640 1264 aaKnown RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 HSD17B3P37058 310 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 AVPR1BP47901 424 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 AGTR2P50052 363 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 OCA2Q04671 838 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 RGS1Q08116 209 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 SSPNQ14714 243 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 NAA30Q147X3 362 aaPredicted RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 RASA2Q15283 850 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 TBCCQ15814 346 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 NKG7Q16617 165 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 PFKFB4Q16877 469 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 ERCC6LQ2NKX8 1250 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 DEFB109BQ30KR1 87 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 PCSK4Q6UW60 755 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 TMIGD1Q6UXZ0 262 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 TDRPQ86YL5 185 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 RAB43Q86YS6 212 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 DTWD1Q8N5C7 304 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 ANKRD53Q8N9V6 530 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 NT5CQ8TCD5 201 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 AENQ8WTP8 325 aaKnown RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 NACC2Q96BF6 587 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 WDR34Q96EX3 536 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 PTCD3Q96EY7 689 aaKnown RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 MMABQ96EY8 250 aaPredicted RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 SCYL1Q96KG9 808 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 IP6K3Q96PC2 410 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 MRPL57Q9BQC6 102 aaKnown RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 EFCAB11Q9BUY7 163 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 SPNS1Q9H2V7 528 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 MRPL46Q9H2W6 279 aaKnown RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 NT5DC2Q9H857 520 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 ZNF358Q9NW07 568 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 XPR1Q9UBH6 696 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 CTSFQ9UBX1 484 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.31□□□□□ -0.6
LIG3-213ENST00000590630 TBK1Q9UHD2 729 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 MAN2B2Q9Y2E5 1009 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 MAP4K5Q9Y4K4 846 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 ASB1Q9Y576 335 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 TNPO3Q9Y5L0 923 aaKnown RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 KCNMB2Q9Y691 235 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 SLC22A7Q9Y694 548 aa11.31□□□□□ -0.6
LIG3-213ENST00000590630 V9GYY5 206 aaPredicted RBP11.31□□□□□ -0.6
LIG3-213ENST00000590630 IGLV3-12A0A075B6K2 115 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 A0A0A6YYC8 382 aaPredicted RBP11.3□□□□□ -0.6
LIG3-213ENST00000590630 URADA6NGE7 173 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 VSTM2BA6NLU5 285 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 I3L1I5 382 aaPredicted RBP11.3□□□□□ -0.6
LIG3-213ENST00000590630 CDH16O75309 829 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 STATHP02808 62 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 TUBBP07437 444 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 SFTPCP11686 197 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 EPB42P16452 691 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 CASP2P42575 452 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 PIK3CGP48736 1102 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 SKP1P63208 163 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 IRF8Q02556 426 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 PCDH1Q08174 1060 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 LAPTM5Q13571 262 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 E2F2Q14209 437 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 SLBPQ14493 270 aaKnown RBP eCLIP11.3□□□□□ -0.6
LIG3-213ENST00000590630 HERC3Q15034 1050 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 RBBP5Q15291 538 aaKnown RBP11.3□□□□□ -0.6
LIG3-213ENST00000590630 PCBP2Q15366 365 aaKnown RBP eCLIP11.3□□□□□ -0.6
LIG3-213ENST00000590630 LINC00303Q3SY05 128 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 XKR6Q5GH73 641 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 PAGE2BQ5JRK9 111 aa11.3□□□□□ -0.6
LIG3-213ENST00000590630 FAM69BQ5VUD6 431 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms