RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 PRR20EP86478 221 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 PRR20CP86479 221 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 PRR20DP86480 221 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 PRR20BP86481 221 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 PRR20AP86496 221 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 SRSF11Q05519 484 aaKnown RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 SIM2Q14190 667 aaPredicted RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 E2F2Q14209 437 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 HEPACAMQ14CZ8 416 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 SUZ12Q15022 739 aaKnown RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 CCDC6Q16204 474 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 MAPKAPK3Q16644 382 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 SLC5A12Q1EHB4 618 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 DUOXA1Q1HG43 343 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 DEFB133Q30KQ1 61 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 TRMT5Q32P41 509 aaKnown RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 C14orf28Q4W4Y0 310 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 TIGD2Q4W5G0 525 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 TMEM35AQ53FP2 167 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 ZC3H12BQ5HYM0 836 aaKnown RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 PLA2G2CQ5R387 149 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 C6orf10Q5SRN2 563 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 C1orf146Q5VVC0 180 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 KHDRBS2Q5VWX1 349 aaKnown RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 NIPAL1Q6NVV3 410 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 NOXRED1Q6NXP6 359 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 ZCCHC8Q6NZY4 707 aaKnown RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 PAOXQ6QHF9 649 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 SPESP1Q6UW49 350 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 LAYNQ6UX15 382 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 XKR5Q6UX68 686 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 HACD2Q6Y1H2 254 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 Q6ZSR9 355 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 MSANTD1Q6ZTZ1 278 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 IKBIPQ70UQ0 350 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 ABHD13Q7L211 337 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 DHDDSQ86SQ9 333 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 NRROSQ86YC3 692 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 TREML1Q86YW5 311 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 SCUBE1Q8IWY4 988 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.94□□□□□ -1.465e-6■■■■■ 81.8
LIG3-206ENST00000586058 LRRC56Q8IYG6 542 aaPredicted RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 DEFB107AQ8IZN7 70 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 NAGSQ8N159 534 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 KIF2BQ8N4N8 673 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 FBXL6Q8N531 539 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 C1orf52Q8N6N3 182 aaKnown RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 NATD1Q8N6N6 113 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 ARL10Q8N8L6 244 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 LMNTD1Q8N9Z9 388 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 LINC01555Q8NAE3 123 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 CAMKVQ8NCB2 501 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 RBM15BQ8NDT2 890 aaKnown RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 ABHD11Q8NFV4 315 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 TNIP2Q8NFZ5 429 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 OR6C4Q8NGE1 309 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 OR2A1Q8NGT9 310 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 OR2T11Q8NH01 316 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 JADE3Q92613 823 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 PIGKQ92643 395 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 NELL1Q92832 810 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 RGMAQ96B86 450 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 THAP11Q96EK4 314 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 PRR11Q96HE9 360 aaPredicted RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 PRAP1Q96NZ9 151 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 NECAB3Q96P71 396 aaPredicted RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 TSSK3Q96PN8 268 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 ELF4Q99607 663 aaPredicted RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 SH3GL1Q99961 368 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 THTPAQ9BU02 230 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 FAIM2Q9BWQ8 316 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 TBC1D10AQ9BXI6 508 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 EBPLQ9BY08 206 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 TRIM15Q9C019 465 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 TCEAL2Q9H3H9 227 aaPredicted RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 UCK1Q9HA47 277 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 FARSBQ9NSD9 589 aaKnown RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 GIMAP4Q9NUV9 329 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 CUEDC1Q9NWM3 386 aaPredicted RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 HRASLS2Q9NWW9 162 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 IRAK4Q9NWZ3 460 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 SOHLH2Q9NX45 425 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 ZSCAN32Q9NX65 697 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 ADA2Q9NZK5 511 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 SCHIP1Q9P0W5 487 aaPredicted RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 ZNF624Q9P2J8 865 aaPredicted RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 EPHA6Q9UF33 1036 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 GIMAP2Q9UG22 337 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 MCM8Q9UJA3 840 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 CROTQ9UKG9 612 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 PCDHGB4Q9UN71 923 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 CORO2BQ9UQ03 480 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 AP3M1Q9Y2T2 418 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 GPR45Q9Y5Y3 372 aa5.94□□□□□ -1.46
LIG3-206ENST00000586058 COL5A1P20908 1838 aaPredicted RBP5.94□□□□□ -1.46
LIG3-206ENST00000586058 PCDH15Q96QU1 1955 aa5.93□□□□□ -1.46
LIG3-206ENST00000586058 SCN3AQ9NY46 2000 aa5.93□□□□□ -1.46
LIG3-206ENST00000586058 SZT2Q5T011 3432 aa5.93□□□□□ -1.46
LIG3-206ENST00000586058 A0A1B0GVT2 93 aa5.93□□□□□ -1.46
LIG3-206ENST00000586058 A0A1W2PP18 115 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms