RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ACSF3Q4G176 576 aaPredicted RBP15.01□□□□□ -0.01
VPS53-218ENST00000575207 PRR31Q5SQ13 230 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.01□□□□□ -0.01
VPS53-218ENST00000575207 SLC25A41Q8N5S1 370 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 OR2L3Q8NG85 312 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 SLC22A8Q8TCC7 542 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 MIPEPQ99797 713 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 IL1RL2Q9HB29 575 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 FKBPLQ9UIM3 349 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 TRGV5A0A0B4J1U4 118 aa15□□□□□ -0.01
VPS53-218ENST00000575207 A0A0G2JMM0 328 aa15□□□□□ -0.01
VPS53-218ENST00000575207 A0A1W2PPB8 328 aa15□□□□□ -0.01
VPS53-218ENST00000575207 A0A1W2PRS3 328 aa15□□□□□ -0.01
VPS53-218ENST00000575207 SLC5A10A0PJK1 596 aa15□□□□□ -0.01
VPS53-218ENST00000575207 KIR3DP1A8MWS1 328 aa15□□□□□ -0.01
VPS53-218ENST00000575207 TMCO5BA8MYB1 307 aa15□□□□□ -0.01
VPS53-218ENST00000575207 KDM4EB2RXH2 506 aaPredicted RBP15□□□□□ -0.01
VPS53-218ENST00000575207 EPHB6O15197 1021 aa15□□□□□ -0.01
VPS53-218ENST00000575207 GPRIN2O60269 458 aa15□□□□□ -0.01
VPS53-218ENST00000575207 ITGA10O75578 1167 aa15□□□□□ -0.01
VPS53-218ENST00000575207 IDUAP35475 653 aa15□□□□□ -0.01
VPS53-218ENST00000575207 TNNT3P45378 269 aaPredicted RBP15□□□□□ -0.01
VPS53-218ENST00000575207 AGFG1P52594 562 aaKnown RBP15□□□□□ -0.01
VPS53-218ENST00000575207 ADARP55265 1226 aaKnown RBP15□□□□□ -0.01
VPS53-218ENST00000575207 PLOD1Q02809 727 aaPredicted RBP15□□□□□ -0.01
VPS53-218ENST00000575207 DPYSL3Q14195 570 aa15□□□□□ -0.01
VPS53-218ENST00000575207 DNAJC21Q5F1R6 531 aaKnown RBP15□□□□□ -0.01
VPS53-218ENST00000575207 PPP1R2P3Q6NXS1 205 aa15□□□□□ -0.01
VPS53-218ENST00000575207 GK5Q6ZS86 529 aa15□□□□□ -0.01
VPS53-218ENST00000575207 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15□□□□□ -0.012e-7■■■■■ 278.5
VPS53-218ENST00000575207 DEPDC4Q8N2C3 294 aa15□□□□□ -0.01
VPS53-218ENST00000575207 CLDN19Q8N6F1 224 aa15□□□□□ -0.01
VPS53-218ENST00000575207 OR4K2Q8NGD2 314 aa15□□□□□ -0.01
VPS53-218ENST00000575207 OR51Q1Q8NH59 317 aa15□□□□□ -0.01
VPS53-218ENST00000575207 ZNF830Q96NB3 372 aaPredicted RBP15□□□□□ -0.01
VPS53-218ENST00000575207 WDR83Q9BRX9 315 aaKnown RBP15□□□□□ -0.01
VPS53-218ENST00000575207 ZDHHC3Q9NYG2 299 aa15□□□□□ -0.01
VPS53-218ENST00000575207 KCMF1Q9P0J7 381 aa15□□□□□ -0.01
VPS53-218ENST00000575207 MED12Q93074 2177 aa15□□□□□ -0.01
VPS53-218ENST00000575207 ATP6AP2A0A1C7CYW4 349 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 MAGEB17A8MXT2 336 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 PHF2O75151 1096 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 VPS26AO75436 327 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 ATP6AP2O75787 350 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 PSMB5P28074 263 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 KLK7P49862 253 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 WNT3AP56704 352 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 OR4D2P58180 307 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 SNRPNP63162 240 aaKnown RBP14.99□□□□□ -0.01
VPS53-218ENST00000575207 RHAGQ02094 409 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 SLC25A11Q02978 314 aaKnown RBP14.99□□□□□ -0.01
VPS53-218ENST00000575207 BRD3Q15059 726 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 KCTD11Q693B1 232 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 DNM1P46Q6ZS02 220 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 SNX20Q7Z614 316 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 BTLAQ7Z6A9 289 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 OR2A1Q8NGT9 310 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 HS3ST6Q96QI5 342 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 ANGPTL4Q9BY76 406 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 GLOD4Q9HC38 313 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 CIDEBQ9UHD4 219 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 ARL5AQ9Y689 179 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 VWFP04275 2813 aa14.99□□□□□ -0.01
VPS53-218ENST00000575207 TXNDC9O14530 226 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 AP2A2O94973 939 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 NSA2O95478 260 aaKnown RBP14.98□□□□□ -0.01
VPS53-218ENST00000575207 CRYGSP22914 178 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 LOXP28300 417 aaPredicted RBP14.98□□□□□ -0.01
VPS53-218ENST00000575207 OCRLQ01968 901 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 NAA25Q14CX7 972 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 SLC1A5Q15758 541 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 HSP90AA4PQ58FG1 418 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 OR9A4Q8NGU2 314 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 TSLPQ969D9 159 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 HSPBAP1Q96EW2 488 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 MARK4Q96L34 752 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 OR2A5Q96R48 311 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 FAM173AQ9BQD7 235 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 DEFB126Q9BYW3 111 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 FAM96AQ9H5X1 160 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 EXO5Q9H790 373 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 ZNF226Q9NYT6 803 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 FAM153AQ9UHL3 310 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 SCINQ9Y6U3 715 aa14.98□□□□□ -0.01
VPS53-218ENST00000575207 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.98□□□□□ -0.01
VPS53-218ENST00000575207 A0A0A6YYK5 440 aaPredicted RBP14.97□□□□□ -0.01
VPS53-218ENST00000575207 A0A0U1RQJ8 604 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 MATN4O95460 622 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 ITGALP20701 1170 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 TYSND1Q2T9J0 566 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 NSUN5P2Q63ZY6 315 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 DCUN1D3Q8IWE4 304 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 GPALPP1Q8IXQ4 340 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.97□□□□□ -0.01
VPS53-218ENST00000575207 ENOX1Q8TC92 643 aaKnown RBP14.97□□□□□ -0.01
VPS53-218ENST00000575207 ELMO1Q92556 727 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 PIGQQ9BRB3 760 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 ZNF670Q9BS34 389 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 DPH7Q9BTV6 452 aa14.97□□□□□ -0.01
VPS53-218ENST00000575207 SLC39A10Q9ULF5 831 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms