RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 KCNK2O95069 426 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 TGFB1P01137 390 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 SERPIND1P05546 499 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 CKBP12277 381 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 TNNI3P19429 210 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 TUFMP49411 452 aaKnown RBP13.99□□□□□ -0.17
VPS35-210ENST00000568784 INPP1P49441 399 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 SRSF11Q05519 484 aaKnown RBP13.99□□□□□ -0.17
VPS35-210ENST00000568784 UGT8Q16880 541 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 DEFB128Q7Z7B8 93 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 CCDC71Q8IV32 467 aaPredicted RBP13.99□□□□□ -0.17
VPS35-210ENST00000568784 CHPFQ8IZ52 775 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 OR9Q1Q8NGQ5 310 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 PIH1D2Q8WWB5 315 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 SOCS4Q8WXH5 440 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 NIPSNAP1Q9BPW8 284 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 NTMT1Q9BV86 223 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 SLC29A3Q9BZD2 475 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 FBXO8Q9NRD0 319 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 LHX3Q9UBR4 397 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 NEUROG3Q9Y4Z2 214 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 SPDYE7PQ495Y7 208 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 THOC7Q6I9Y2 204 aaKnown RBP13.98□□□□□ -0.17
VPS35-210ENST00000568784 CXorf57Q6NSI4 855 aaKnown RBP13.98□□□□□ -0.17
VPS35-210ENST00000568784 TRIM46Q7Z4K8 759 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 FATE1Q969F0 183 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 TMEM159Q96B96 161 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 MGLLQ99685 303 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 PCDHGA6Q9Y5G7 932 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 PEX16Q9Y5Y5 336 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 NUMA1Q14980 2115 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 DYRK3O43781 588 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 OR10H3O60404 316 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 GRK5P34947 590 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 MGAT3Q09327 533 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 GPRC6AQ5T6X5 926 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 TYW3Q6IPR3 259 aaKnown RBP13.98□□□□□ -0.17
VPS35-210ENST00000568784 CAPN13Q6MZZ7 669 aaPredicted RBP13.98□□□□□ -0.17
VPS35-210ENST00000568784 DEF8Q6ZN54 512 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 DACT3Q96B18 629 aaPredicted RBP13.98□□□□□ -0.17
VPS35-210ENST00000568784 ZNF486Q96H40 463 aaPredicted RBP13.98□□□□□ -0.17
VPS35-210ENST00000568784 HTATIP2Q9BUP3 242 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 NDRG4Q9ULP0 352 aaKnown RBP13.98□□□□□ -0.17
VPS35-210ENST00000568784 ADAMDEC1O15204 470 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 TMCC2O75069 709 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 AMD1P17707 334 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 SOX3P41225 446 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 TUBA1BP68363 451 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 TNFAIP8L2Q6P589 184 aaPredicted RBP13.98□□□□□ -0.17
VPS35-210ENST00000568784 TUBA1AQ71U36 451 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 ZSWIM9Q86XI8 627 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 CYP4Z2PQ8N1L4 340 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 AQP11Q8NBQ7 271 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 CDK5RAP1Q96SZ6 601 aaKnown RBP13.98□□□□□ -0.17
VPS35-210ENST00000568784 KLHL3Q9UH77 587 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 SLC45A1Q9Y2W3 748 aa13.98□□□□□ -0.17
VPS35-210ENST00000568784 BRCA1P38398 1863 aaKnown RBP13.97□□□□□ -0.17
VPS35-210ENST00000568784 CLCA1A8K7I4 914 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 E7EQ34 232 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 NUAK1O60285 661 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 C6orf47O95873 294 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 FHP07954 510 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 ZNF24P17028 368 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 HNF4AP41235 474 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 BDKRB1P46663 353 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 AP1S1P61966 158 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 RPS26P62854 115 aaKnown RBP13.97□□□□□ -0.17
VPS35-210ENST00000568784 FXNQ16595 210 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 BCL7AQ4VC05 210 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 ZC3H12BQ5HYM0 836 aaKnown RBP13.97□□□□□ -0.17
VPS35-210ENST00000568784 DEPDC4Q8N2C3 294 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 HJURPQ8NCD3 748 aaPredicted RBP13.97□□□□□ -0.17
VPS35-210ENST00000568784 CPNE5Q9HCH3 593 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 MIEF1Q9NQG6 463 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 DYRK4Q9NR20 520 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 CLN6Q9NWW5 311 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 TMCC3Q9ULS5 477 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 METTL15A6NJ78 407 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 TSC22D2O75157 780 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 GADD45GO95257 159 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 CASP3P42574 277 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 TGM4P49221 684 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 MC1RQ01726 317 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 LRIT3Q3SXY7 679 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 LEXMQ3ZCV2 418 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 IFI44LQ53G44 452 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 FAM131AQ6UXB0 335 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 NEK10Q6ZWH5 1172 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 USP45Q70EL2 814 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 BBS7Q8IWZ6 715 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 PDLIM5Q96HC4 596 aaKnown RBP13.97□□□□□ -0.17
VPS35-210ENST00000568784 COL21A1Q96P44 957 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 FAM129BQ96TA1 746 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 OR51B5Q9H339 312 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 TMEM184CQ9NVA4 438 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 DNMT3BQ9UBC3 853 aaKnown RBP13.97□□□□□ -0.17
VPS35-210ENST00000568784 LSM7Q9UK45 103 aaKnown RBP13.97□□□□□ -0.17
VPS35-210ENST00000568784 AP3D1O14617 1153 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 AP2A2O94973 939 aa13.97□□□□□ -0.17
VPS35-210ENST00000568784 NKX3-2P78367 333 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms