RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ANKHQ9HCJ1 492 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 HCN3Q9P1Z3 774 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 TEKT2Q9UIF3 430 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 A0A1B0GUH1 482 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 OR5H15A6NDH6 313 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 OR2W5A6NFC9 320 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 SEC24DO94855 1032 aaPredicted RBP15.18■□□□□ 0.02
CLN3-229ENST00000567963 TSPAN12O95859 305 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 CDH1P12830 882 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 GRK3P35626 688 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 ZNF33BQ06732 778 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 ZRSR2Q15696 482 aaKnown RBP15.18■□□□□ 0.02
CLN3-229ENST00000567963 PLAG1Q6DJT9 500 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 GALNT7Q86SF2 657 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 ASPGQ86U10 573 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 PDSS2Q86YH6 399 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 IGDCC3Q8IVU1 814 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 LINGO1Q96FE5 620 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 C19orf25Q9UFG5 118 aaPredicted RBP15.18■□□□□ 0.02
CLN3-229ENST00000567963 ASIC3Q9UHC3 531 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 SNX12Q9UMY4 172 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 SLC22A7Q9Y694 548 aa15.18■□□□□ 0.02
CLN3-229ENST00000567963 ZG16O60844 167 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 RASAL1O95294 804 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 MYBL2P10244 700 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 AGTR2P50052 363 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 KCNK10P57789 538 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 IL2P60568 153 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 BTBD16Q32M84 506 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 TEDDM1Q5T9Z0 273 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 DUPD1Q68J44 220 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 H3F3CQ6NXT2 135 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 ANKRD37Q7Z713 158 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 FJX1Q86VR8 437 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 MFSD9Q8NBP5 474 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 ABHD11Q8NFV4 315 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 OR4K1Q8NGD4 311 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 DNAJB8Q8NHS0 232 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 SUN3Q8TAQ9 357 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 ZCCHC10Q8TBK6 192 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 SLCO2A1Q92959 643 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 PYCR2Q96C36 320 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 CERS2Q96G23 380 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 HAUS8Q9BT25 410 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 SARGQ9BW04 601 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 DDX47Q9H0S4 455 aaKnown RBP15.17■□□□□ 0.02
CLN3-229ENST00000567963 PLAC1Q9HBJ0 212 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 ARL15Q9NXU5 204 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 NAALAD2Q9Y3Q0 740 aa15.17■□□□□ 0.02
CLN3-229ENST00000567963 A8MUI8 341 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 PRAMEF2O60811 474 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 RDH16O75452 317 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 CRYABP02511 175 aaKnown RBP15.16■□□□□ 0.02
CLN3-229ENST00000567963 SLC35G6P0C7Q6 338 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 IVDP26440 423 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 PGGT1BP53609 377 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 AP1S2P56377 157 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 PDAP1Q13442 181 aaKnown RBP15.16■□□□□ 0.02
CLN3-229ENST00000567963 BBS9Q3SYG4 887 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 C1QL3Q5VWW1 255 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 OR56A3Q8NH54 315 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 RELTQ969Z4 430 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 SNF8Q96H20 258 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 PPANQ9NQ55 473 aaKnown RBP15.16■□□□□ 0.02
CLN3-229ENST00000567963 ABI3Q9P2A4 366 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 SLC17A6Q9P2U8 582 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 VWA7Q9Y334 891 aa15.16■□□□□ 0.02
CLN3-229ENST00000567963 IL10P22301 178 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 CCR8P51685 355 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 MEF2AQ02078 507 aaPredicted RBP15.15■□□□□ 0.02
CLN3-229ENST00000567963 HERC3Q15034 1050 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 ACER2Q5QJU3 275 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 HECTD2Q5U5R9 776 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 GFRALQ6UXV0 394 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 SLC34A3Q8N130 599 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 ZNF740Q8NDX6 193 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 PLPP5Q8NEB5 264 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 M1APQ8TC57 530 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 MOCOSQ96EN8 888 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 PEX11GQ96HA9 241 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 ZNF354BQ96LW1 612 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 OR4K3Q96R72 315 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 OR1F2PQ96R84 312 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 TRIM54Q9BYV2 358 aa15.15■□□□□ 0.02
CLN3-229ENST00000567963 PABPN1LA6NDY0 278 aaKnown RBP15.14■□□□□ 0.01
CLN3-229ENST00000567963 NDUFS4O43181 175 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 ZSCAN12O43309 604 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 OR1F1O43749 312 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 CDC123O75794 336 aaPredicted RBP15.14■□□□□ 0.01
CLN3-229ENST00000567963 MST1P26927 711 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 ELK3P41970 407 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 RHAGQ02094 409 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 SRSF11Q05519 484 aaKnown RBP15.14■□□□□ 0.01
CLN3-229ENST00000567963 PWP1Q13610 501 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 NSDHLQ15738 373 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 EXT1Q16394 746 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 HP1BP3Q5SSJ5 553 aaPredicted RBP15.14■□□□□ 0.01
CLN3-229ENST00000567963 FCRLBQ6BAA4 426 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 PDIK1LQ8N165 341 aa15.14■□□□□ 0.01
CLN3-229ENST00000567963 AFAP1L2Q8N4X5 818 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 163.6 ms