RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 A0A1B0GX78 115 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 C4orf51C9J302 202 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 FOXS1O43638 330 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 B3GALT4O96024 378 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 RPS17P08708 135 aaKnown RBP18.61■□□□□ 0.57
CLN3-225ENST00000566824 HBQ1P09105 142 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 EPB42P16452 691 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 GRK3P35626 688 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 CASP2P42575 452 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 IRF8Q02556 426 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 HYAL2Q12891 473 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 DNASE1L3Q13609 305 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 E2F2Q14209 437 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 NKAIN1Q4KMZ8 207 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 UNC50Q53HI1 259 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 COX15Q7KZN9 410 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 ZCCHC10Q8TBK6 192 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 CREB3L4Q8TEY5 395 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 TMEM237Q96Q45 408 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 CAPS2Q9BXY5 557 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 EHD1Q9H4M9 534 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 KLHL31Q9H511 634 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 IPPKQ9H8X2 491 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 GPN2Q9H9Y4 310 aaPredicted RBP18.61■□□□□ 0.57
CLN3-225ENST00000566824 SLC17A7Q9P2U7 560 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 MAU2Q9Y6X3 613 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 MGAQ8IWI9 3026 aa18.61■□□□□ 0.57
CLN3-225ENST00000566824 FFAR3O14843 346 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 GPR42O15529 346 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 H2AFYO75367 372 aaKnown RBP18.6■□□□□ 0.57
CLN3-225ENST00000566824 TBX6O95947 436 aaPredicted RBP18.6■□□□□ 0.57
CLN3-225ENST00000566824 SERPIND1P05546 499 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 KLK3P07288 261 aaPredicted RBP18.6■□□□□ 0.57
CLN3-225ENST00000566824 ATP5F1P24539 256 aaPredicted RBP18.6■□□□□ 0.57
CLN3-225ENST00000566824 ARSFP54793 590 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 CDH13P55290 713 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 PCDH1Q08174 1060 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 LRIG3Q6UXM1 1119 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 CNPY4Q8N129 248 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 RNF175Q8N4F7 328 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 OR52B6Q8NGF0 335 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 ZNF483Q8TF39 744 aaPredicted RBP18.6■□□□□ 0.57
CLN3-225ENST00000566824 PTCD3Q96EY7 689 aaKnown RBP18.6■□□□□ 0.57
CLN3-225ENST00000566824 APOPT1Q96IL0 206 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 CDK15Q96Q40 435 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 NOL11Q9H8H0 719 aaKnown RBP18.6■□□□□ 0.57
CLN3-225ENST00000566824 MKS1Q9NXB0 559 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 COPG2Q9UBF2 871 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 ZFP69BQ9UJL9 534 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 GRID1Q9ULK0 1009 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 TMCO1Q9UM00 188 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 ANGPTL3Q9Y5C1 460 aa18.6■□□□□ 0.57
CLN3-225ENST00000566824 TNPO3Q9Y5L0 923 aaKnown RBP18.6■□□□□ 0.57
CLN3-225ENST00000566824 SCN2AQ99250 2005 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 A0A0A6YYC8 382 aaPredicted RBP18.59■□□□□ 0.57
CLN3-225ENST00000566824 I3L1I5 382 aaPredicted RBP18.59■□□□□ 0.57
CLN3-225ENST00000566824 RGS16O15492 202 aaPredicted RBP18.59■□□□□ 0.57
CLN3-225ENST00000566824 NDUFS4O43181 175 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 KATNA1O75449 491 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 TAC1P20366 129 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 AHRP35869 848 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 CCT5P48643 541 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 DCDP81605 110 aaKnown RBP18.59■□□□□ 0.57
CLN3-225ENST00000566824 TBCCQ15814 346 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 COL28A1Q2UY09 1125 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 FAM214AQ32MH5 1076 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 TNFAIP8L3Q5GJ75 292 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 ZNF678Q5SXM1 525 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 ATP1A1-AS1Q5TC04 95 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 YOD1Q5VVQ6 348 aaPredicted RBP18.59■□□□□ 0.57
CLN3-225ENST00000566824 TMEM214Q6NUQ4 689 aaKnown RBP18.59■□□□□ 0.57
CLN3-225ENST00000566824 TMIGD1Q6UXZ0 262 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 ZYG11AQ6WRX3 759 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 PDSS2Q86YH6 399 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 ENDOVQ8N8Q3 282 aaKnown RBP18.59■□□□□ 0.57
CLN3-225ENST00000566824 CAMKVQ8NCB2 501 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 NT5CQ8TCD5 201 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 PROKR1Q8TCW9 393 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 C1QTNF3Q9BXJ4 246 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 CENPHQ9H3R5 247 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 NT5DC2Q9H857 520 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 SEMA4BQ9NPR2 832 aaPredicted RBP18.59■□□□□ 0.57
CLN3-225ENST00000566824 PLLPQ9Y342 182 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 RNF11Q9Y3C5 154 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 PCSK5Q92824 1860 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 CACNA1BQ00975 2339 aa18.59■□□□□ 0.57
CLN3-225ENST00000566824 NBEAQ8NFP9 2946 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 NKX2-8O15522 239 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 DNAJB6O75190 326 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 H2AFXP16104 143 aaPredicted RBP18.58■□□□□ 0.57
CLN3-225ENST00000566824 HNF4AP41235 474 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 PRKAA2P54646 552 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 EMP3P54852 163 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 HERVK_113P63132 956 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 TRAF3Q13114 568 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 CASP8Q14790 479 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 MUM1Q2TAK8 710 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 MLIPQ5VWP3 458 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 CCDC81Q6ZN84 652 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 EXOC3L1Q86VI1 746 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms