RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PPP4R1Q8TF05 950 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 CDKL2Q92772 493 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 CNDP1Q96KN2 507 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 EGFL8Q99944 293 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 RHOJQ9H4E5 214 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 GPAMQ9HCL2 828 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 SMYD2Q9NRG4 433 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 HCN3Q9P1Z3 774 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 CTNNAL1Q9UBT7 734 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 DYRK1BQ9Y463 629 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 CSAG2Q9Y5P2 127 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 TRBC2A0A5B9 178 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 NPEPPSL1A6NEC2 478 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 WFS1O76024 890 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 UQCRHP07919 91 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 PRR35P0CG20 571 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 C8orf89P0DMQ9 161 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 ILF2Q12905 390 aaKnown RBP19.62■□□□□ 0.73
CLN3-219ENST00000565778 EIF2S3LQ2VIR3 472 aaKnown RBP19.62■□□□□ 0.73
CLN3-219ENST00000565778 TMEM205Q6UW68 189 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 C3orf62Q6ZUJ4 267 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 THOC6Q86W42 341 aaKnown RBP19.62■□□□□ 0.73
CLN3-219ENST00000565778 CEP97Q8IW35 865 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 ANKRD49Q8WVL7 239 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 SLC5A11Q8WWX8 675 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 NEIL2Q969S2 332 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 TSNARE1Q96NA8 513 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 CYTH2Q99418 400 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 RIC8BQ9NVN3 520 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 PTGFRNQ9P2B2 879 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 MTO1Q9Y2Z2 717 aaKnown RBP19.62■□□□□ 0.73
CLN3-219ENST00000565778 NAALAD2Q9Y3Q0 740 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 SLC22A7Q9Y694 548 aa19.62■□□□□ 0.73
CLN3-219ENST00000565778 LOC102723996A0A087X1L8 192 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 CXorf49A8MYA2 514 aaPredicted RBP19.61■□□□□ 0.73
CLN3-219ENST00000565778 NDUFS4O43181 175 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 AGFG2O95081 481 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 SERPINA7P05543 415 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 ICAM2P13598 275 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 XCR1P46094 333 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 PLTPP55058 493 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 POU4F1Q01851 419 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 MFAP5Q13361 173 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 MRPL49Q13405 166 aaKnown RBP19.61■□□□□ 0.73
CLN3-219ENST00000565778 PPP1R3AQ16821 1122 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 FRA10AC1Q70Z53 315 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 ZNF740Q8NDX6 193 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 PRR7Q8TB68 274 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 MOCOSQ96EN8 888 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 SARGQ9BW04 601 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 VN1R1Q9GZP7 353 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 ZNF700Q9H0M5 742 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 POPDC3Q9HBV1 291 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 GRHL1Q9NZI5 618 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 SLC22A14Q9Y267 594 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 OARD1Q9Y530 152 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 PCDHGA10Q9Y5H3 936 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 KCNE2Q9Y6J6 123 aa19.61■□□□□ 0.73
CLN3-219ENST00000565778 RELNP78509 3460 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 CDC16Q13042 620 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 PWP1Q13610 501 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 USP10Q14694 798 aaKnown RBP19.6■□□□□ 0.73
CLN3-219ENST00000565778 HERC3Q15034 1050 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 RBBP5Q15291 538 aaKnown RBP19.6■□□□□ 0.73
CLN3-219ENST00000565778 NR6A1Q15406 480 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 TSNQ15631 228 aaKnown RBP19.6■□□□□ 0.73
CLN3-219ENST00000565778 CRB2Q5IJ48 1285 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 SHISA5Q8N114 240 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 SIRT6Q8N6T7 355 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 CATSPER1Q8NEC5 780 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 BRIX1Q8TDN6 353 aaKnown RBP19.6■□□□□ 0.73
CLN3-219ENST00000565778 RAB17Q9H0T7 212 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 CAB39LQ9H9S4 337 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 AGPAT4Q9NRZ5 378 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 FLNCQ14315 2725 aa19.6■□□□□ 0.73
CLN3-219ENST00000565778 COL12A1Q99715 3063 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 A0A1W2PQ72 361 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 DYTNA2CJ06 578 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 OR2W5A6NFC9 320 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 RDH16O75452 317 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 HNMTP50135 292 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 EFNA3P52797 238 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 AP2B1P63010 937 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 ARG2P78540 354 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 CDKL1Q00532 357 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 CAV1Q03135 178 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 RGS1Q08116 209 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 ZNF169Q14929 603 aaPredicted RBP19.59■□□□□ 0.73
CLN3-219ENST00000565778 PCOLCEQ15113 449 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 TLR1Q15399 786 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 NXPE4Q6UWF7 544 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 RIPOR1Q6ZS17 1223 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 CYS1Q717R9 158 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 CPEB2Q7Z5Q1 589 aaKnown RBP19.59■□□□□ 0.73
CLN3-219ENST00000565778 ADAMTSL2Q86TH1 951 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 CCDC25Q86WR0 208 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 PDSS2Q86YH6 399 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 CTAGE3PQ8IX95 158 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 SPATA6LQ8N4H0 392 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 PSMF1Q92530 271 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms