RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PDZD3Q86UT5 571 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 BHLHE22Q8NFJ8 381 aaPredicted RBP8.9□□□□□ -0.98
VPS39-205ENST00000562258 RP9Q8TA86 221 aaKnown RBP8.9□□□□□ -0.98
VPS39-205ENST00000562258 REXO5Q96IC2 774 aaKnown RBP8.9□□□□□ -0.98
VPS39-205ENST00000562258 SLC12A9Q9BXP2 914 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 PDFQ9HBH1 243 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 SPAG4Q9NPE6 437 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 TRNAU1APQ9NX07 287 aaKnown RBP8.9□□□□□ -0.98
VPS39-205ENST00000562258 EHD3Q9NZN3 535 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 SLC9A8Q9Y2E8 581 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 OARD1Q9Y530 152 aa8.9□□□□□ -0.98
VPS39-205ENST00000562258 A6NCN8 305 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 FAM220BPB1ANY3 271 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 KRT33AO76009 404 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 CISD3P0C7P0 127 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 PRDX3P30048 256 aaKnown RBP8.9□□□□□ -0.99
VPS39-205ENST00000562258 ERVK-8P63133 956 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 SHC2P98077 582 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 GRM7Q14831 915 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 NR0B2Q15466 257 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 DUOXA1Q1HG43 343 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 CYB5D1Q6P9G0 228 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 DEPDC7Q96QD5 511 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 SH3GL2Q99962 352 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 ZFYVE21Q9BQ24 234 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.9□□□□□ -0.99
VPS39-205ENST00000562258 CD93Q9NPY3 652 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 PRTFDC1Q9NRG1 225 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 GIN1Q9NXP7 522 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 WSB2Q9NYS7 404 aaPredicted RBP8.9□□□□□ -0.99
VPS39-205ENST00000562258 LYVE1Q9Y5Y7 322 aa8.9□□□□□ -0.99
VPS39-205ENST00000562258 COPG1Q9Y678 874 aaKnown RBP8.9□□□□□ -0.99
VPS39-205ENST00000562258 KIF13BQ9NQT8 1826 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 CENPFP49454 3210 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 TRAPPC6AO75865 159 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 PDYNP01213 254 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 MPC1LP0DKB6 136 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 MTHFD1P11586 935 aaKnown RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 JAK1P23458 1154 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 RPL4P36578 427 aaKnown RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 NOVA1P51513 510 aaKnown RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 XKP51811 444 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 UFM1P61960 85 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 ERV3-1Q14264 604 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 UNC50Q53HI1 259 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 NXPE4Q6UWF7 544 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 PARP9Q8IXQ6 854 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 KLHDC8AQ8IYD2 350 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 MFSD2AQ8NA29 543 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 KDM1BQ8NB78 822 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 ZNF740Q8NDX6 193 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 DDHD1Q8NEL9 900 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 RAB8BQ92930 207 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 CNDP2Q96KP4 475 aaKnown RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 MAP3K3Q99759 626 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 CUEDC1Q9NWM3 386 aaPredicted RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 METTL12A8MUP2 240 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 ALOX12P18054 663 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 FASP25445 335 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 AOAHP28039 575 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 CCKBRP32239 447 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 NUDT1P36639 197 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 MPLP40238 635 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 IDH2P48735 452 aaKnown RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 PRLHRP49683 370 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 NUP107P57740 925 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 RGS8P57771 180 aaPredicted RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 AGBL4Q5VU57 503 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 ETFBKMTQ8IXQ9 262 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 MINDY1Q8N5J2 469 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 OR10Q1Q8NGQ4 319 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 OR52J3Q8NH60 311 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 RIN3Q8TB24 985 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 SEC14L1Q92503 715 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 SH3YL1Q96HL8 342 aaPredicted RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 C5orf34Q96MH7 638 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 ELF4Q99607 663 aaPredicted RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 TCEAL2Q9H3H9 227 aaPredicted RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 FARSBQ9NSD9 589 aaKnown RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 ABI3Q9P2A4 366 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 DHCR7Q9UBM7 475 aaKnown RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 SPTBN1Q01082 2364 aaKnown RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 YY2O15391 372 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 DEAF1O75398 565 aaPredicted RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 LDLRP01130 860 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 HIST1H2ABP04908 130 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 NR2F6P10588 404 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 PIM1P11309 404 aaPredicted RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 PTNP21246 168 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 ST13P50502 369 aaKnown RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 RPA4Q13156 261 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 ABRAXAS2Q15018 415 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 PIP5KL1Q5T9C9 394 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 SPESP1Q6UW49 350 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 TMEM26Q6ZUK4 368 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 HIST3H2AQ7L7L0 130 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 AMIGO2Q86SJ2 522 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 RNF168Q8IYW5 571 aaPredicted RBP8.89□□□□□ -0.99
VPS39-205ENST00000562258 SLC22A15Q8IZD6 547 aa8.89□□□□□ -0.99
VPS39-205ENST00000562258 HIST1H2ACQ93077 130 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms