RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 MLLT10P55197 1068 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 CDH13P55290 713 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 OCRLQ01968 901 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 IRF8Q02556 426 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 CDC16Q13042 620 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 LAPTM5Q13571 262 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 NAA25Q14CX7 972 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 CYP2A13Q16696 494 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.32□□□□□ -0.6
LDLR-212ENST00000560467 SH2D4BQ5SQS7 431 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 SPATA21Q7Z572 469 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 GOLGA7Q7Z5G4 137 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 CUZD1Q86UP6 607 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 AMIGO1Q86WK6 493 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 ZNF480Q8WV37 535 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 UBE2E3Q969T4 207 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 REPS1Q96D71 796 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 RILPQ96NA2 401 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 ZNF382Q96SR6 550 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 ZPBPQ9BS86 351 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 EFHD1Q9BUP0 239 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 TBC1D10AQ9BXI6 508 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 SLCO1B3Q9NPD5 702 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 FBXO8Q9NRD0 319 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 SIDT1Q9NXL6 827 aaKnown RBP11.32□□□□□ -0.6
LDLR-212ENST00000560467 SLC22A14Q9Y267 594 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 TRAF6Q9Y4K3 522 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 A0A0G2JND7 137 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 AZIN1O14977 448 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 POLR1CO15160 346 aaPredicted RBP11.31□□□□□ -0.6
LDLR-212ENST00000560467 HDAC3O15379 428 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 TAPBPO15533 448 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 UGDHO60701 494 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 VPS4BO75351 444 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 LYPLA1O75608 230 aaPredicted RBP11.31□□□□□ -0.6
LDLR-212ENST00000560467 ESRRBO95718 433 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 KRT6AP02538 564 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 KRT6BP04259 564 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 UROSP10746 265 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 HRH2P25021 359 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 HMOX2P30519 316 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 GRK3P35626 688 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 GDF5P43026 501 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 KRT6CP48668 564 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 ARFIP2P53365 341 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 GFERP55789 205 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 PHEXP78562 749 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 MC1RQ01726 317 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 KLRB1Q12918 225 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 C4orf17Q53FE4 359 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 MBOAT1Q6ZNC8 495 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 ACAD11Q709F0 780 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 C17orf64Q86WR6 236 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 RASGRP3Q8IV61 690 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 ESX1Q8N693 406 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 CCDC197Q8NCU1 140 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 OR6Y1Q8NGX8 325 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 OR2L8Q8NGY9 312 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 OR56A3Q8NH54 315 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 METTL6Q8TCB7 284 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 AGR3Q8TD06 166 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 ULBP3Q9BZM4 244 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 SHCBP1LQ9BZQ2 653 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 GSTO2Q9H4Y5 243 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 SLC40A1Q9NP59 571 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 NPHS2Q9NP85 383 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 MRGBPQ9NV56 204 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 MARCOQ9UEW3 520 aaPredicted RBP11.31□□□□□ -0.6
LDLR-212ENST00000560467 CROTQ9UKG9 612 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 SNX6Q9UNH7 406 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 TRIM33Q9UPN9 1127 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 KCNMB2Q9Y691 235 aa11.31□□□□□ -0.6
LDLR-212ENST00000560467 RP1L1Q8IWN7 2480 aaPredicted RBP11.31□□□□□ -0.6
LDLR-212ENST00000560467 ISM1B1AKI9 464 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 E7ENX8 843 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 MATN2O00339 956 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 ITM2AO43736 263 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 CHRNGP07510 517 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 FGF4P08620 206 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 FURINP09958 794 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 AMD1P17707 334 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 DRD4P21917 467 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 IMPA1P29218 277 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 CMPK1P30085 196 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 DLSTP36957 453 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 HNF4AP41235 474 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 SLC19A1P41440 591 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 UQCRFS1P47985 274 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 SLC6A12P48065 614 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 CD97P48960 835 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 EPHA4P54764 986 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 TBPL1P62380 186 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 ABATP80404 500 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 TAP2Q03519 686 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 FOXM1Q08050 763 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 IFT88Q13099 833 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 SF1Q15637 639 aaKnown RBP11.3□□□□□ -0.6
LDLR-212ENST00000560467 FBXO48Q5FWF7 155 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 XKR6Q5GH73 641 aa11.3□□□□□ -0.6
LDLR-212ENST00000560467 C10orf62Q5T681 223 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms