RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TBL3Q12788 808 aaKnown RBP10.75□□□□□ -0.69
USP3-218ENST00000560202 DYNC1I2Q13409 638 aaKnown RBP10.75□□□□□ -0.69
USP3-218ENST00000560202 CCDC6Q16204 474 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 PDCD4Q53EL6 469 aaKnown RBP10.75□□□□□ -0.69
USP3-218ENST00000560202 AGKQ53H12 422 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 CACHD1Q5VU97 1274 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 ZCCHC8Q6NZY4 707 aaKnown RBP10.75□□□□□ -0.69
USP3-218ENST00000560202 ZC3H14Q6PJT7 736 aaKnown RBP10.75□□□□□ -0.69
USP3-218ENST00000560202 FIGLAQ6QHK4 219 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 ASRGL1Q7L266 308 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 GALNT15Q8N3T1 639 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 TTLQ8NG68 377 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 OR2I1PQ8NGU4 316 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 OR4C6Q8NH72 309 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 NAF1Q96HR8 494 aaKnown RBP10.75□□□□□ -0.69
USP3-218ENST00000560202 METTL2AQ96IZ6 378 aaKnown RBP10.75□□□□□ -0.69
USP3-218ENST00000560202 APOLD1Q96LR9 279 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 PPM1MQ96MI6 270 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 SERPINI1Q99574 410 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 TSC22D3Q99576 134 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 VCXQ9H320 206 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 OR51B5Q9H339 312 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 EVA1BQ9NVM1 165 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 ANKMY1Q9P2S6 941 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 GMEB2Q9UKD1 530 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 POMT2Q9UKY4 750 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 RAB23Q9ULC3 237 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 KLK4Q9Y5K2 254 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 KMT2EQ8IZD2 1858 aa10.75□□□□□ -0.69
USP3-218ENST00000560202 A0A0J9YY10 115 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 OR2A25A4D2G3 310 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 HNRNPCL1O60812 293 aaKnown RBP10.74□□□□□ -0.69
USP3-218ENST00000560202 TBX6O95947 436 aaPredicted RBP10.74□□□□□ -0.69
USP3-218ENST00000560202 MYF5P13349 255 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 HOXB3P14651 431 aaPredicted RBP10.74□□□□□ -0.69
USP3-218ENST00000560202 ACPPP15309 386 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 GSTM2P28161 218 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 MAPK1P28482 360 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 AHRP35869 848 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 CAPZBP47756 277 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 CPA2P48052 419 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 LSSP48449 732 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 ACSM2AQ08AH3 577 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 CUL3Q13618 768 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 HERC3Q15034 1050 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 ACSM2BQ68CK6 577 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 FCRL6Q6DN72 434 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 NOXRED1Q6NXP6 359 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 CYP20A1Q6UW02 462 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 SNX32Q86XE0 403 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 FUNDC1Q8IVP5 155 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 LIX1Q8N485 282 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 POU5F2Q8N7G0 328 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 MFSD9Q8NBP5 474 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 OR9I1Q8NGQ6 314 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 RP9Q8TA86 221 aaKnown RBP10.74□□□□□ -0.69
USP3-218ENST00000560202 CHTF18Q8WVB6 975 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 ZUFSPQ96AP4 578 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 C11orf24Q96F05 449 aaPredicted RBP10.74□□□□□ -0.69
USP3-218ENST00000560202 FCRL1Q96LA6 429 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 GTPBP2Q9BX10 602 aaKnown RBP10.74□□□□□ -0.69
USP3-218ENST00000560202 MS4A8Q9BY19 250 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 MRPL1Q9BYD6 325 aaKnown RBP10.74□□□□□ -0.69
USP3-218ENST00000560202 ABCG4Q9H172 646 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 SMOC1Q9H4F8 434 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 ZIM2Q9NZV7 527 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 CCDC167Q9P0B6 97 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 PADI4Q9UM07 663 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 RUVBL1Q9Y265 456 aaKnown RBP10.74□□□□□ -0.69
USP3-218ENST00000560202 DLGAP4Q9Y2H0 992 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 LAMA1P25391 3075 aa10.74□□□□□ -0.69
USP3-218ENST00000560202 SAP18O00422 153 aaKnown RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 KHNYNO15037 678 aaKnown RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 CLEC3AO75596 197 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 SLC22A3O75751 556 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 MYO1DO94832 1006 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 PRPS2P11908 318 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 BCKDHAP12694 445 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 PVRP15151 417 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 ACADSP16219 412 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 ENGP17813 658 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 ALDH4A1P30038 563 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 GPR3P46089 330 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 PPM1FP49593 454 aaPredicted RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 RASSF2P50749 326 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 UFM1P61960 85 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 RPS15AP62244 130 aaKnown RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 CYLC2Q14093 348 aaPredicted RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 TAF11Q15544 211 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 MAPRE2Q15555 327 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 SPIN4Q56A73 249 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 DEPDC1Q5TB30 811 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 KHDRBS2Q5VWX1 349 aaKnown RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 FBXO42Q6P3S6 717 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 GK5Q6ZS86 529 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 C1orf52Q8N6N3 182 aaKnown RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 DRAXINQ8NBI3 349 aaPredicted RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 BAHD1Q8TBE0 780 aaPredicted RBP10.73□□□□□ -0.69
USP3-218ENST00000560202 CREB3L4Q8TEY5 395 aa10.73□□□□□ -0.69
USP3-218ENST00000560202 TEX37Q96LM6 180 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms