RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 STX19Q8N4C7 294 aa15.73■□□□□ 0.11
SHMT2-232ENST00000557487 HJURPQ8NCD3 748 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-232ENST00000557487 C11orf65Q8NCR3 313 aa15.73■□□□□ 0.11
SHMT2-232ENST00000557487 UBE2FQ969M7 185 aa15.73■□□□□ 0.11
SHMT2-232ENST00000557487 YIPF2Q9BWQ6 316 aa15.73■□□□□ 0.11
SHMT2-232ENST00000557487 OR2B2Q9GZK3 357 aa15.73■□□□□ 0.11
SHMT2-232ENST00000557487 SIAEQ9HAT2 523 aa15.73■□□□□ 0.11
SHMT2-232ENST00000557487 CNOT2Q9NZN8 540 aaKnown RBP15.73■□□□□ 0.11
SHMT2-232ENST00000557487 TRPM5Q9NZQ8 1165 aa15.73■□□□□ 0.11
SHMT2-232ENST00000557487 VPS51Q9UID3 782 aa15.73■□□□□ 0.11
SHMT2-232ENST00000557487 FCF1Q9Y324 198 aaKnown RBP15.73■□□□□ 0.11
SHMT2-232ENST00000557487 KRT8P05787 483 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 ADORA3P0DMS8 318 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 C21orf33P30042 268 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-232ENST00000557487 TIE1P35590 1138 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 TGFBR1P36897 503 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 PIK3CBP42338 1070 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 SEPHS1P49903 392 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 NEK2P51955 445 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 ARMCX4Q5H9R4 360 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 ATXN7L2Q5T6C5 722 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-232ENST00000557487 AGAP6Q5VW22 663 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 GPR153Q6NV75 609 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 ZNF544Q6NX49 715 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 FUT10Q6P4F1 479 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 CCBE1Q6UXH8 406 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-232ENST00000557487 CCDC103Q8IW40 242 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 OR10G2Q8NGC3 310 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 ASB11Q8WXH4 323 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 TPD52L3Q96J77 140 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 EGLN2Q96KS0 407 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 AGAP4Q96P64 663 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 COPS8Q99627 209 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 MYOCQ99972 504 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 KLF16Q9BXK1 252 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-232ENST00000557487 CDCA4Q9BXL8 241 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 NUAK2Q9H093 628 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 RACGAP1Q9H0H5 632 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 ELAC1Q9H777 363 aaKnown RBP15.72■□□□□ 0.11
SHMT2-232ENST00000557487 C3orf14Q9HBI5 128 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 SPATA7Q9P0W8 599 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 FAM172BPA6NC97 362 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 KPNA5O15131 536 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 ALOX12P18054 663 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 GABRB1P18505 474 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 CST5P28325 142 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-232ENST00000557487 CA5AP35218 305 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 HNF1BP35680 557 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 SLC19A1P41440 591 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 SELENOWP63302 87 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 PPIGQ13427 754 aaKnown RBP eCLIP15.72■□□□□ 0.113e-8■□□□□ 10.3
SHMT2-232ENST00000557487 PTCHD3Q3KNS1 767 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 PLEKHS1Q5SXH7 462 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 C19orf48Q6RUI8 117 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 RSPO2Q6UXX9 243 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-232ENST00000557487 CCDC190Q86UF4 302 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 ST13P5Q8NFI4 369 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-232ENST00000557487 LINC01599Q8WXQ3 324 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 TMCO6Q96DC7 493 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 CXorf40BQ96DE9 158 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 PAWRQ96IZ0 340 aaKnown RBP15.72■□□□□ 0.11
SHMT2-232ENST00000557487 KCNC2Q96PR1 638 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 DUSP26Q9BV47 211 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 C2orf49Q9BVC5 232 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-232ENST00000557487 THSD1Q9NS62 852 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 VPS29Q9UBQ0 182 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 ZNF282Q9UDV7 671 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-232ENST00000557487 FZD4Q9ULV1 537 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 PCDHGA2Q9Y5H1 932 aa15.72■□□□□ 0.11
SHMT2-232ENST00000557487 IGLV3-16A0A075B6K0 115 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 SCAMP2O15127 329 aaKnown RBP15.71■□□□□ 0.11
SHMT2-232ENST00000557487 ZW10O43264 779 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 PARNO95453 639 aaKnown RBP15.71■□□□□ 0.11
SHMT2-232ENST00000557487 CLDN7O95471 211 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 CPSF4O95639 269 aaKnown RBP15.71■□□□□ 0.11
SHMT2-232ENST00000557487 B3GALT4O96024 378 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 MZF1P28698 734 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-232ENST00000557487 FPGSQ05932 587 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 RBBP4Q09028 425 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 KCNA10Q16322 511 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 RNF180Q86T96 592 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 HEATR4Q86WZ0 1026 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 KRT73Q86Y46 540 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 SYTL1Q8IYJ3 562 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 TTC16Q8NEE8 873 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 OR4C15Q8NGM1 316 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 SNX18Q96RF0 628 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 FEVQ99581 238 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 C11orf49Q9H6J7 331 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 ZNF556Q9HAH1 456 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 BRF2Q9HAW0 419 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 NEK6Q9HC98 313 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 SPATA6Q9NWH7 488 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-232ENST00000557487 MARCH5Q9NX47 278 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 VPS4AQ9UN37 437 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 SCN8AQ9UQD0 1980 aa15.71■□□□□ 0.11
SHMT2-232ENST00000557487 C1orf226A1L170 272 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 GFYI3L273 518 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 TLL1O43897 1013 aa15.7■□□□□ 0.1
SHMT2-232ENST00000557487 TBL1XO60907 577 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms