RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PADI2Q9Y2J8 665 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 MGAQ8IWI9 3026 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 STX16-NPEPL1H3BU86 382 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 STX16O14662 325 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 NDUFS4O43181 175 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 ONECUT2O95948 504 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 PRKAR1AP10644 381 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 EPORP19235 508 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 ITGAXP20702 1163 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 OR1D4P47884 311 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 PIK3CGP48736 1102 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 RPS18P62269 152 aaKnown RBP12.93□□□□□ -0.34
SHMT2-228ENST00000557302 CYP4F2P78329 520 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 NFKB2Q00653 900 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 RGS1Q08116 209 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 CDC20Q12834 499 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 CHIT1Q13231 466 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 LAPTM5Q13571 262 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 PWP1Q13610 501 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 FAM53BQ14153 422 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 DOC2AQ14183 400 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 TBCCQ15814 346 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 CRTC2Q53ET0 693 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-228ENST00000557302 PAGE2BQ5JRK9 111 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 TMEM214Q6NUQ4 689 aaKnown RBP12.93□□□□□ -0.34
SHMT2-228ENST00000557302 METTL2BQ6P1Q9 378 aaKnown RBP12.93□□□□□ -0.34
SHMT2-228ENST00000557302 C16orf46Q6P387 395 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 TMIGD1Q6UXZ0 262 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 SYVN1Q86TM6 617 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 ARHGEF39Q8N4T4 335 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 DTWD1Q8N5C7 304 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 ANKRD53Q8N9V6 530 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 TTLQ8NG68 377 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-228ENST00000557302 COL26A1Q96A83 441 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 FKBP10Q96AY3 582 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 PHF21BQ96EK2 531 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 WDR34Q96EX3 536 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 ZNF304Q9HCX3 659 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 SLC22A11Q9NSA0 550 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 TMEM216Q9P0N5 145 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 DCDC2Q9UHG0 476 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 TCFL5Q9UL49 500 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 PLAAQ9Y263 795 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 MAU2Q9Y6X3 613 aa12.93□□□□□ -0.34
SHMT2-228ENST00000557302 MDC1Q14676 2089 aaKnown RBP12.93□□□□□ -0.34
SHMT2-228ENST00000557302 SMG1Q96Q15 3661 aaKnown RBP12.93□□□□□ -0.34
SHMT2-228ENST00000557302 LRRC14BA6NHZ5 514 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 FOXO6A8MYZ6 492 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 PRPF4O43172 522 aaKnown RBP eCLIP12.92□□□□□ -0.34
SHMT2-228ENST00000557302 PRAMEF4O60810 478 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 GLRA3O75311 464 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 ERLIN1O75477 346 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 SIX3O95343 332 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-228ENST00000557302 RECKO95980 971 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 ALBP02768 609 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 SBK3P0C264 359 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 TAC1P20366 129 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 FBLP22087 321 aaKnown RBP12.92□□□□□ -0.34
SHMT2-228ENST00000557302 GSTM2P28161 218 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 EEF1DP29692 281 aaKnown RBP12.92□□□□□ -0.34
SHMT2-228ENST00000557302 CASP2P42575 452 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 AVPR1BP47901 424 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 CCT5P48643 541 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 GTF2H2Q13888 395 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 DSG2Q14126 1118 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 ERV3-1Q14264 604 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 HIST2H2ACQ16777 129 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-228ENST00000557302 PRAMEF9Q5VWM5 478 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 HIST2H2AA3Q6FI13 130 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 GTF2H2CQ6P1K8 395 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 MRPL14Q6P1L8 145 aaKnown RBP12.92□□□□□ -0.34
SHMT2-228ENST00000557302 COX15Q7KZN9 410 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 OVCH1Q7RTY7 1134 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.92□□□□□ -0.34
SHMT2-228ENST00000557302 TMEM151AQ8N4L1 468 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 KCT2Q8NC54 265 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 TRPV3Q8NET8 790 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 ZCCHC10Q8TBK6 192 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 SEC16BQ96JE7 1060 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 NT5DC2Q9H857 520 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 COPG2Q9UBF2 871 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 LGALS13Q9UHV8 139 aa12.92□□□□□ -0.34
SHMT2-228ENST00000557302 RALYQ9UKM9 306 aaKnown RBP12.92□□□□□ -0.34
SHMT2-228ENST00000557302 MRPS2Q9Y399 296 aaKnown RBP12.92□□□□□ -0.34
SHMT2-228ENST00000557302 PTRH2Q9Y3E5 179 aaKnown RBP12.92□□□□□ -0.34
SHMT2-228ENST00000557302 IGSF10Q6WRI0 2623 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 A0A0A6YYC8 382 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-228ENST00000557302 CDC14CA4D256 554 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 URADA6NGE7 173 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 A8MT66 165 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 I3L1I5 382 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-228ENST00000557302 E2F3O00716 465 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 COPEO14579 308 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 FOXS1O43638 330 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 KLF7O75840 302 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-228ENST00000557302 WFS1O76024 890 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 KRT4P19013 534 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 CD22P20273 847 aa12.91□□□□□ -0.34
SHMT2-228ENST00000557302 FOLR3P41439 243 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms