RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 CLDN11O75508 207 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 FCER2P06734 321 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 AKR1A1P14550 325 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 TCF3P15923 654 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 PRKACBP22694 351 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 RPL3P39023 403 aaKnown RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 STAT5AP42229 794 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 KCNQ1P51787 676 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 NCBP2P52298 156 aaKnown RBP eCLIP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 GNG2P59768 71 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 SMN1Q16637 294 aaKnown RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 KLHL22Q53GT1 634 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 ATG9BQ674R7 924 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 AMIGO1Q86WK6 493 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 RGL4Q8IZJ4 473 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 CLECL1Q8IZS7 167 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 IQCF1Q8N6M8 205 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 FAM46DQ8NEK8 389 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 LILRB4Q8NHJ6 448 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 FUBP1Q96AE4 644 aaKnown RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 SECISBP2Q96T21 854 aaKnown RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 SPATA5L1Q9BVQ7 753 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 RANGRFQ9HD47 186 aaPredicted RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 TAS2R16Q9NYV7 291 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 UTS2RQ9UKP6 389 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 PLCL2Q9UPR0 1127 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 DNMT3AQ9Y6K1 912 aaPredicted RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 CLCA3PQ9Y6N3 262 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 A0A075B6Q4 140 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 J3KTA2 159 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 ATG13O75143 517 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 MATN4O95460 622 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 URODP06132 367 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 MRPL3P09001 348 aaKnown RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 RPL17P18621 184 aaKnown RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 PIGAP37287 484 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 KHKP50053 298 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 DAPP51397 102 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 MEF2AQ02078 507 aaPredicted RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 CBX2Q14781 532 aaPredicted RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 CTU2Q2VPK5 515 aaKnown RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 DUSP28Q4G0W2 176 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 C9orf131Q5VYM1 1079 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 CAPN13Q6MZZ7 669 aaPredicted RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 PGBD2Q6P3X8 592 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 SLC36A4Q6YBV0 504 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 RNF111Q6ZNA4 994 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 COMMD2Q86X83 199 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 PEX5LQ8IYB4 626 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 TOMM5Q8N4H5 51 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 OR9Q2Q8NGE9 314 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 OR13F1Q8NGS4 319 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 GRHL3Q8TE85 626 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 XAGE5Q8WWM1 108 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 KLHL6Q8WZ60 621 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 CLP1Q92989 425 aaKnown RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 ITPKCQ96DU7 683 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 SLC35G5Q96KT7 338 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 RDH12Q96NR8 316 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 IL12RB2Q99665 862 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 SPATA9Q9BWV2 254 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 SLC32A1Q9H598 525 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 WDR6Q9NNW5 1121 aaKnown RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 TXNRD2Q9NNW7 524 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 CD300AQ9UGN4 299 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 NUFIP1Q9UHK0 495 aaKnown RBP4.83□□□□□ -1.64
SYNE2-223ENST00000557005 GRIP1Q9Y3R0 1128 aa4.83□□□□□ -1.64
SYNE2-223ENST00000557005 PSMD9O00233 223 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 AP3D1O14617 1153 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 TEX28O15482 410 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 SLC19A2O60779 497 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PRAMEF11O60813 436 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CAPN15O75808 1086 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 SEC14L2O76054 403 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PAPSS2O95340 614 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 IFNA7P01567 189 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 FHP07954 510 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PTX3P26022 381 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ACRV1P26436 265 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 NPRL3Q12980 569 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 SERINC3Q13530 473 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 KEAP1Q14145 624 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 TEAD4Q15561 434 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 FAM180BQ6P0A1 224 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 Q6ZPB1 254 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PRSS48Q7RTY5 328 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 NOXA1Q86UR1 476 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 MEX3DQ86XN8 651 aaKnown RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CADM3Q8N126 398 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 METTL4Q8N3J2 472 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 MFSD2AQ8NA29 543 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 MDGA1Q8NFP4 955 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CXorf40AQ8TE69 158 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 GTF2H4Q92759 462 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 KAT2AQ92830 837 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ACDQ96AP0 544 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PLD4Q96BZ4 506 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 MAPKAP1Q9BPZ7 522 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PAAF1Q9BRP4 392 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 DPAGT1Q9H3H5 408 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms