RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 ALPPL2P10696 532 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ZNF18P17022 549 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 LHCGRP22888 699 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 DGKAP23743 735 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ALDH4A1P30038 563 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 NKX2-1P43699 371 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-210ENST00000556718 OR3A1P47881 315 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ZNF132P52740 706 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 STARD6P59095 220 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 MYL7Q01449 175 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 SLC3A1Q07837 685 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ACCSLQ4AC99 568 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 PDLIM3Q53GG5 364 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ARMCX4Q5H9R4 360 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 CCNYL2Q5T2Q4 361 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 LCN1P1Q5VSP4 162 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 PM20D1Q6GTS8 502 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 BTN2A1Q7KYR7 527 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 G2E3Q7L622 706 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ANKRD33Q7Z3H0 272 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ISCA2Q86U28 154 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 SERPINA12Q8IW75 414 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 CCDC60Q8IWA6 550 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ZNF444Q8N0Y2 327 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-210ENST00000556718 NAGSQ8N159 534 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 BATF2Q8N1L9 274 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 LMNTD1Q8N9Z9 388 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 POC1AQ8NBT0 407 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 OR13A1Q8NGR1 328 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 URGCPQ8TCY9 931 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ANP32BQ92688 251 aaKnown RBP3.93□□□□□ -1.78
PRPF39-210ENST00000556718 PRCCQ92733 491 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-210ENST00000556718 TMEM143Q96AN5 459 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ULK4Q96C45 1275 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ST6GAL2Q96JF0 529 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 ZNF560Q96MR9 790 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 NAP1L5Q96NT1 182 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-210ENST00000556718 PSD2Q9BQI7 771 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 P2RY12Q9H244 342 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 PNNQ9H307 717 aaKnown RBP3.93□□□□□ -1.78
PRPF39-210ENST00000556718 CPVLQ9H3G5 476 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 TFB2MQ9H5Q4 396 aaKnown RBP3.93□□□□□ -1.78
PRPF39-210ENST00000556718 TMOD3Q9NYL9 352 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 FLRT3Q9NZU0 649 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 TSPAN16Q9UKR8 245 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 CCPG1Q9ULG6 757 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 TNNQ9UQP3 1299 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 RPH3AQ9Y2J0 694 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-210ENST00000556718 KLK4Q9Y5K2 254 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 R4GN57 208 aa3.93□□□□□ -1.78
PRPF39-210ENST00000556718 CENPJQ9HC77 1338 aaPredicted RBP3.93□□□□□ -1.78
PRPF39-210ENST00000556718 A0A087X0K7 114 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 C2orf92A0A1B0GVN3 265 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 MAGEB16A2A368 324 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 C5orf51A6NDU8 294 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 PRAC2D3DTV9 90 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 TULP2O00295 520 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 EPHB6O15197 1021 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 ATP6V0E1O15342 81 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 PRKNO60260 465 aaPredicted RBP3.92□□□□□ -1.78
PRPF39-210ENST00000556718 ATP6V1G1O75348 118 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 BAG3O95817 575 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 YES1P07947 543 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 TPM2P07951 284 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 GP1BBP13224 206 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 ARF4P18085 180 aaPredicted RBP3.92□□□□□ -1.78
PRPF39-210ENST00000556718 NR0B1P51843 470 aaKnown RBP3.92□□□□□ -1.78
PRPF39-210ENST00000556718 SMSP52788 366 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 RPP38P78345 283 aaKnown RBP3.92□□□□□ -1.78
PRPF39-210ENST00000556718 PPP1R8Q12972 351 aaKnown RBP3.92□□□□□ -1.78
PRPF39-210ENST00000556718 HERC3Q15034 1050 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 PDK1Q15118 436 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 FGD3Q5JSP0 725 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 WBP2NLQ6ICG8 309 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 MACC1Q6ZN28 852 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 MTERF4Q7Z6M4 381 aaKnown RBP3.92□□□□□ -1.78
PRPF39-210ENST00000556718 ADCK1Q86TW2 530 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 RCOR2Q8IZ40 523 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 THEM5Q8N1Q8 247 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 TEX9Q8N6V9 391 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 KLHDC1Q8N7A1 406 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 MAPKAPK5-AS1Q8N8E1 139 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 CLEC1AQ8NC01 280 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 OR4C15Q8NGM1 316 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 LRRC8CQ8TDW0 803 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 CD101Q93033 1021 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 RFT1Q96AA3 541 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 TRIM44Q96DX7 344 aaPredicted RBP3.92□□□□□ -1.78
PRPF39-210ENST00000556718 NDNQ99608 321 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 CCDC3Q9BQI4 270 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 KRT23Q9C075 422 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 OR2B2Q9GZK3 357 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 DDX47Q9H0S4 455 aaKnown RBP3.92□□□□□ -1.78
PRPF39-210ENST00000556718 TSPYL1Q9H0U9 437 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 BICC1Q9H694 974 aaKnown RBP3.92□□□□□ -1.78
PRPF39-210ENST00000556718 SYTL2Q9HCH5 934 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 PHPT1Q9NRX4 125 aaPredicted RBP3.92□□□□□ -1.78
PRPF39-210ENST00000556718 ZCCHC3Q9NUD5 404 aaKnown RBP3.92□□□□□ -1.78
PRPF39-210ENST00000556718 EXOC1Q9NV70 894 aa3.92□□□□□ -1.78
PRPF39-210ENST00000556718 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms