RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 RPLP0P05388 317 aaKnown RBP3□□□□□ -1.93
SCFD1-216ENST00000555550 ACHEP22303 614 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 NDST2P52849 883 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 LIMK1P53667 647 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 CLDN15P56746 228 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 ERVK-16P61578 105 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 DLK1P80370 383 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 FKBP3Q00688 224 aaKnown RBP3□□□□□ -1.93
SCFD1-216ENST00000555550 CACNG1Q06432 222 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 KIAA0141Q14154 515 aaPredicted RBP3□□□□□ -1.93
SCFD1-216ENST00000555550 BECN1Q14457 450 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 DUSP5Q16690 384 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 LACTB2Q53H82 288 aaPredicted RBP3□□□□□ -1.93
SCFD1-216ENST00000555550 SPECC1Q5M775 1068 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 ERMARDQ5T6L9 678 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 TIPARPQ7Z3E1 657 aaKnown RBP3□□□□□ -1.93
SCFD1-216ENST00000555550 PRPF39Q86UA1 669 aaKnown RBP3□□□□□ -1.93
SCFD1-216ENST00000555550 AMIGO1Q86WK6 493 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 MAML2Q8IZL2 1156 aaPredicted RBP3□□□□□ -1.93
SCFD1-216ENST00000555550 SUMF1Q8NBK3 374 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 PI4K2AQ9BTU6 479 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 GTPBP2Q9BX10 602 aaKnown RBP3□□□□□ -1.93
SCFD1-216ENST00000555550 DNAI2Q9GZS0 605 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 MAF1Q9H063 256 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 ADNPQ9H2P0 1102 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 RAVER2Q9HCJ3 691 aaKnown RBP3□□□□□ -1.93
SCFD1-216ENST00000555550 COLEC10Q9Y6Z7 277 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 A0A087WZ39 114 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 MTMR11A4FU01 709 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 C17orf105B2RV13 164 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 K7ENM7 598 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 RTCAO00442 366 aaKnown RBP2.99□□□□□ -1.93
SCFD1-216ENST00000555550 TRAFD1O14545 582 aaPredicted RBP2.99□□□□□ -1.93
SCFD1-216ENST00000555550 PHOX2AO14813 284 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 OGTO15294 1046 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 MYBL1P10243 752 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 PCP11498 1178 aaKnown RBP2.99□□□□□ -1.93
SCFD1-216ENST00000555550 F3P13726 295 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 MYOGP15173 224 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 CPT2P23786 658 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 PKLRP30613 574 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 HSPA4P34932 840 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 ZNF146Q15072 292 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 PTGISQ16647 500 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 CRY2Q49AN0 593 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 FAM106AQ4KMX7 169 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 NAA16Q6N069 864 aaPredicted RBP2.99□□□□□ -1.93
SCFD1-216ENST00000555550 TTC27Q6P3X3 843 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 CFAP161Q6P656 301 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 PRSS55Q6UWB4 352 aaPredicted RBP2.99□□□□□ -1.93
SCFD1-216ENST00000555550 PLPPR4Q7Z2D5 763 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 CEACAM19Q7Z692 300 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 MARCH9Q86YJ5 346 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 SPPL2AQ8TCT8 520 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 NEDD4LQ96PU5 975 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 NDNQ99608 321 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 JPT2Q9H910 190 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 BCCIPQ9P287 314 aaKnown RBP eCLIP2.99□□□□□ -1.93
SCFD1-216ENST00000555550 POMT2Q9UKY4 750 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 PLCL2Q9UPR0 1127 aa2.99□□□□□ -1.93
SCFD1-216ENST00000555550 HCFC1P51610 2035 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 TRIM49BA6NDI0 452 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 A8MVM7 634 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 PDHXO00330 501 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 PHF1O43189 567 aaPredicted RBP2.98□□□□□ -1.93
SCFD1-216ENST00000555550 TLX2O43763 284 aaPredicted RBP2.98□□□□□ -1.93
SCFD1-216ENST00000555550 SAP30O75446 220 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 MTRF1O75570 445 aaKnown RBP2.98□□□□□ -1.93
SCFD1-216ENST00000555550 ADORA3P0DMS8 318 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 AKR1B1P15121 316 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 EPORP19235 508 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 GPR183P32249 361 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 ATP4BP51164 291 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 AIMP1Q12904 312 aaKnown RBP2.98□□□□□ -1.93
SCFD1-216ENST00000555550 FAM182AQ5T1J6 154 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 MFSD4BQ5TF39 518 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 ENPP7Q6UWV6 458 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 BRINP3Q76B58 766 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 PIGWQ7Z7B1 504 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 KCNMB4Q86W47 210 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 CCDC60Q8IWA6 550 aaPredicted RBP2.98□□□□□ -1.93
SCFD1-216ENST00000555550 XXYLT1Q8NBI6 393 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.98□□□□□ -1.93
SCFD1-216ENST00000555550 SEPT1Q8WYJ6 367 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 NSMAFQ92636 917 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 IL12RB2Q99665 862 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 POLKQ9UBT6 870 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 SLC12A6Q9UHW9 1150 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 PILRBQ9UKJ0 227 aa2.98□□□□□ -1.93
SCFD1-216ENST00000555550 RNF123Q5XPI4 1314 aa2.97□□□□□ -1.93
SCFD1-216ENST00000555550 IGHV3-38A0A0C4DH36 116 aa2.97□□□□□ -1.93
SCFD1-216ENST00000555550 hCG_38984A0A1B0GV85 526 aa2.97□□□□□ -1.93
SCFD1-216ENST00000555550 A0A1W2PPW3 197 aa2.97□□□□□ -1.93
SCFD1-216ENST00000555550 SHISA7A6NL88 538 aa2.97□□□□□ -1.93
SCFD1-216ENST00000555550 KLLNB2CW77 178 aa2.97□□□□□ -1.93
SCFD1-216ENST00000555550 MAGEB2O15479 319 aa2.97□□□□□ -1.93
SCFD1-216ENST00000555550 ECE2O60344 883 aa2.97□□□□□ -1.93
SCFD1-216ENST00000555550 LUC7L3O95232 432 aaKnown RBP2.97□□□□□ -1.93
SCFD1-216ENST00000555550 YES1P07947 543 aa2.97□□□□□ -1.93
SCFD1-216ENST00000555550 DUX4L4P0CJ87 422 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms