RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 JRKO75564 520 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 EGFP01133 1207 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 ACP5P13686 325 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 AMD1P17707 334 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 CD72P21854 359 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 NFATC3Q12968 1075 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 MAD2L1Q13257 205 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 PWP1Q13610 501 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 PLCL1Q15111 1095 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 IRF4Q15306 451 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 INAQ16352 499 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 BCL7AQ4VC05 210 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 METTL2BQ6P1Q9 378 aaKnown RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 AMZ2Q86W34 360 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 DTWD1Q8N5C7 304 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 OR7G3Q8NG95 312 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 TSPEARQ8WU66 669 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 RSPH9Q9H1X1 276 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 ACTR3BQ9P1U1 418 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 CA5BQ9Y2D0 317 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 VPS13AQ96RL7 3174 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 H0YJX3 145 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 NPPBP16860 134 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 COL9A1P20849 921 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 EEF1B2P24534 225 aaKnown RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 POLR2IP36954 125 aaKnown RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 KIR2DL1P43626 348 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 MRPL19P49406 292 aaKnown RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 RPS13P62277 151 aaKnown RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 ZIK1Q3SY52 487 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 GGTA1PQ4G0N0 100 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 TMEM196Q5HYL7 178 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 SYT12Q8IV01 421 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 DPP10Q8N608 796 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 C1orf52Q8N6N3 182 aaKnown RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 OR56A3Q8NH54 315 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 WDR20Q8TBZ3 569 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 PNPT1Q8TCS8 783 aaKnown RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 MAGEE2Q8TD90 523 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-212ENST00000554467 KCNK6Q9Y257 313 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 PCDHB14Q9Y5E9 798 aa11.26□□□□□ -0.61
SHMT2-212ENST00000554467 PRAMEF33A0A0G2JMD5 474 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TGFB1P01137 390 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 PSMA4P25789 261 aaKnown RBP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 PSMB5P28074 263 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 S100A3P33764 101 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 FOXM1Q08050 763 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 SLBPQ14493 270 aaKnown RBP eCLIP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 GLYATQ6IB77 296 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 FAM180BQ6P0A1 224 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 ADGRG5Q8IZF4 528 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 FAM86B1Q8N7N1 296 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 OR2L2Q8NH16 312 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 ATL1Q8WXF7 558 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 CMTM7Q96FZ5 175 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 CSF3RQ99062 836 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 OR51B5Q9H339 312 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 VPS29Q9UBQ0 182 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 OAZ3Q9UMX2 235 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 KCNE2Q9Y6J6 123 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 MGAT4DA6NG13 374 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 IL10P22301 178 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 LTBRP36941 435 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 ESRRGP62508 458 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TFF2Q03403 129 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TAP2Q03519 686 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 PRKCQQ04759 706 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 SLC14A1Q13336 389 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 HKDC1Q2TB90 917 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TMEM184AQ6ZMB5 413 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 ZNF765Q7L2R6 523 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 FAM20CQ8IXL6 584 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 OR9A1PQ8NGU1 263 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 CSGALNACT1Q8TDX6 532 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 BIRC7Q96CA5 298 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 FBXL20Q96IG2 436 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 GDF15Q99988 308 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 PSD2Q9BQI7 771 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 MROQ9BYG7 248 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 PALMDQ9NP74 551 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 BTBD3Q9Y2F9 522 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TMA7Q9Y2S6 64 aaKnown RBP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TBC1D3DA0A087WVF3 549 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 A0A087WXM4 84 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TBC1D3IA0A087WXS9 549 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TBC1D3EA0A087X179 549 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TBC1D3KA0A087X1G2 549 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 A0A1W2PQU0 124 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TBC1D3FA6NER0 549 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TBC1D3LB9A6J9 549 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TBC1D3HP0C7X1 549 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 MYCLP1P12525 358 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 CLCNKAP51800 687 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 CASP9P55211 416 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 ACSM2AQ08AH3 577 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 BNIP2Q12982 314 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 CAMK2GQ13555 558 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-212ENST00000554467 PYCR3Q53H96 274 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 ACSM2BQ68CK6 577 aa11.25□□□□□ -0.61
SHMT2-212ENST00000554467 TBC1D3GQ6DHY5 549 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms