RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 FFAR3O14843 346 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 GPR42O15529 346 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 ZSCAN9O15535 394 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-209ENST00000553949 NDUFS4O43181 175 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 ITM2AO43736 263 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 CRCPO75575 148 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 LYPLA1O75608 230 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-209ENST00000553949 HSPA4LO95757 839 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 SERPIND1P05546 499 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 RBMS1P29558 406 aaKnown RBP11.68□□□□□ -0.54
SHMT2-209ENST00000553949 SERPINB1P30740 379 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 SLC1A6P48664 564 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 FOXA1P55317 472 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 ABCE1P61221 599 aaKnown RBP11.68□□□□□ -0.54
SHMT2-209ENST00000553949 BST1Q10588 318 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 PWP1Q13610 501 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 GRM7Q14831 915 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 HKDC1Q2TB90 917 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 PRTGQ2VWP7 1150 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.68□□□□□ -0.54
SHMT2-209ENST00000553949 TMEM164Q5U3C3 297 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 PRAMEF17Q5VTA0 474 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 FAM219BQ5XKK7 198 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 TTC19Q6DKK2 380 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-209ENST00000553949 PWWP2BQ6NUJ5 590 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 ATG14Q6ZNE5 492 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 VN1R5Q7Z5H4 357 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 TMEM126BQ8IUX1 230 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 ZNF655Q8N720 491 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-209ENST00000553949 CAMKVQ8NCB2 501 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 TRPV3Q8NET8 790 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 HUS1BQ8NHY5 278 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 RAB3IL1Q8TBN0 382 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 METTL6Q8TCB7 284 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 CREB3L4Q8TEY5 395 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 SLC46A1Q96NT5 459 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 KCNA7Q96RP8 456 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 MACROD1Q9BQ69 325 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 ZPBPQ9BS86 351 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 NLNQ9BYT8 704 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 SLC29A3Q9BZD2 475 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 ELOVL6Q9H5J4 265 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 ZNF395Q9H8N7 513 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-209ENST00000553949 TNFRSF12AQ9NP84 129 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 SNX6Q9UNH7 406 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 RUVBL1Q9Y265 456 aaKnown RBP11.68□□□□□ -0.54
SHMT2-209ENST00000553949 TSC22D4Q9Y3Q8 395 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 B3GALT1Q9Y5Z6 326 aa11.68□□□□□ -0.54
SHMT2-209ENST00000553949 SPTBN4Q9H254 2564 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 HYKKA2RU49 373 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 FITM1A5D6W6 292 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 TRABD2BA6NFA1 517 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 MANBAO00462 879 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 KLF11O14901 512 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 ZNF749O43361 778 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 CLEC3AO75596 197 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 SNRNP200O75643 2136 aaKnown RBP11.67□□□□□ -0.54
SHMT2-209ENST00000553949 SCRG1O75711 98 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 TIAF1O95411 115 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 SLC35G6P0C7Q6 338 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 PIK3CBP42338 1070 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 NEK2P51955 445 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 PHEXP78562 749 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 RGS1Q08116 209 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 IFT88Q13099 833 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 DDX39BQ13838 428 aaKnown RBP11.67□□□□□ -0.54
SHMT2-209ENST00000553949 RTP5Q14D33 572 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 SGO1Q5FBB7 561 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 TCHHL1Q5QJ38 904 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-209ENST00000553949 MANEAQ5SRI9 462 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 C10orf62Q5T681 223 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-209ENST00000553949 FRG2Q64ET8 278 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 ATG16L1Q676U5 607 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 IGF2-ASQ6U949 168 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 TTC29Q8NA56 475 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-209ENST00000553949 WDR20Q8TBZ3 569 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 NT5CQ8TCD5 201 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 ZNF473Q8WTR7 871 aaKnown RBP11.67□□□□□ -0.54
SHMT2-209ENST00000553949 CCT6BQ92526 530 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 ZNF75CPQ92670 426 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-209ENST00000553949 TEFMQ96QE5 360 aaKnown RBP11.67□□□□□ -0.54
SHMT2-209ENST00000553949 FRG2BQ96QU4 278 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 B3GNT4Q9C0J1 378 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 C20orf27Q9GZN8 174 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 PRM3Q9NNZ6 103 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 DMRT3Q9NQL9 472 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 ADGRE2Q9UHX3 823 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 MSRB2Q9Y3D2 182 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 TIMM22Q9Y584 194 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 PCDHB3Q9Y5E6 796 aa11.67□□□□□ -0.54
SHMT2-209ENST00000553949 PCM1Q15154 2024 aa11.66□□□□□ -0.54
SHMT2-209ENST00000553949 LRIT2A6NDA9 550 aa11.66□□□□□ -0.54
SHMT2-209ENST00000553949 FOXE1O00358 373 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-209ENST00000553949 AZIN1O14977 448 aa11.66□□□□□ -0.54
SHMT2-209ENST00000553949 NVLO15381 856 aaKnown RBP11.66□□□□□ -0.54
SHMT2-209ENST00000553949 SNNO75324 88 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-209ENST00000553949 DXOO77932 396 aaKnown RBP11.66□□□□□ -0.54
SHMT2-209ENST00000553949 SNUPNO95149 360 aaKnown RBP11.66□□□□□ -0.54
SHMT2-209ENST00000553949 TBX6O95947 436 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-209ENST00000553949 KRT6AP02538 564 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms