RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 FCGR1BQ92637 280 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 C16orf58Q96GQ5 468 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 NECTIN4Q96NY8 510 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 RTP3Q9BQQ7 232 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 MTMR12Q9C0I1 747 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 SPRTNQ9H040 489 aaPredicted RBP5.34□□□□□ -1.55
SCFD1-208ENST00000553278 SIRPDQ9H106 197 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 DCLRE1BQ9H816 532 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 POT1Q9NUX5 634 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 SLC38A7Q9NVC3 462 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 TMOD3Q9NYL9 352 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 COX16Q9P0S2 106 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 COPS7AQ9UBW8 275 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 MALT1Q9UDY8 824 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 SNX6Q9UNH7 406 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 ERVK-19Q9WJR5 959 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 VDAC3Q9Y277 283 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 NSG2Q9Y328 171 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 TMED7Q9Y3B3 224 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 ANGPTL3Q9Y5C1 460 aa5.34□□□□□ -1.55
SCFD1-208ENST00000553278 DENND3A2RUS2 1198 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 SLC28A2O43868 658 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 NME2P1O60361 137 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 CLN5O75503 358 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 PCCBP05166 539 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 NUDT17P0C025 328 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 THRBP10828 461 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 F3P13726 295 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 FBLP22087 321 aaKnown RBP5.33□□□□□ -1.56
SCFD1-208ENST00000553278 CDH3P22223 829 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 ITGA3P26006 1051 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 PSMA5P28066 241 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 ZNF132P52740 706 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 KCNK10P57789 538 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 PITX1P78337 314 aaPredicted RBP5.33□□□□□ -1.56
SCFD1-208ENST00000553278 GABPB1Q06547 395 aaPredicted RBP5.33□□□□□ -1.56
SCFD1-208ENST00000553278 Q0VFX4 171 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 TAF10Q12962 218 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 OPCMLQ14982 345 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 HLFQ16534 295 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 STX1AQ16623 288 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 ZC2HC1CQ53FD0 456 aaPredicted RBP5.33□□□□□ -1.56
SCFD1-208ENST00000553278 C20orf194Q5TEA3 1177 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 PXDC1Q5TGL8 231 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 COLCA1Q6ZS62 124 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 PIWIL4Q7Z3Z4 852 aaKnown RBP5.33□□□□□ -1.56
SCFD1-208ENST00000553278 RTN4RL2Q86UN3 420 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 PIM3Q86V86 326 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 UNC5CLQ8IV45 518 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 CCDC60Q8IWA6 550 aaPredicted RBP5.33□□□□□ -1.56
SCFD1-208ENST00000553278 TMEM99Q8N816 258 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 BANPQ8N9N5 519 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 KCNH5Q8NCM2 988 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 OR1J1Q8NGS3 322 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 DQX1Q8TE96 717 aaKnown RBP5.33□□□□□ -1.56
SCFD1-208ENST00000553278 SLC5A11Q8WWX8 675 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 WBP2Q969T9 261 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 TAAR6Q96RI8 345 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 NTPCRQ9BSD7 190 aaKnown RBP5.33□□□□□ -1.56
SCFD1-208ENST00000553278 NTMT1Q9BV86 223 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 SF3B5Q9BWJ5 86 aaKnown RBP5.33□□□□□ -1.56
SCFD1-208ENST00000553278 ZNF416Q9BWM5 594 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 NMNAT2Q9BZQ4 307 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 SLITRK6Q9H5Y7 841 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 UBTD1Q9HAC8 227 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 APOBEC3GQ9HC16 384 aaKnown RBP5.33□□□□□ -1.56
SCFD1-208ENST00000553278 PALMDQ9NP74 551 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 TCF7L2Q9NQB0 619 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 FARSBQ9NSD9 589 aaKnown RBP5.33□□□□□ -1.56
SCFD1-208ENST00000553278 ACOXLQ9NUZ1 547 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 ATAD3AQ9NVI7 634 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 C11orf21Q9P2W6 132 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 TEKT2Q9UIF3 430 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 SLC7A7Q9UM01 511 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 STUB1Q9UNE7 303 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 MGAT4BQ9UQ53 548 aa5.33□□□□□ -1.56
SCFD1-208ENST00000553278 A0A0G2JPF8 293 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 A0A0U1RRA0 63 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 ANTXRLA6NF34 631 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 C4orf47A7E2U8 309 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 HNRNPCL3B7ZW38 293 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 EEF2KO00418 725 aaKnown RBP5.32□□□□□ -1.56
SCFD1-208ENST00000553278 CHUKO15111 745 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 MATN3O15232 486 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 STBD1O95210 358 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 NUDT3O95989 172 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 GLUD1P00367 558 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 TMEM191BP0C7N4 346 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 HNRNPCL4P0DMR1 293 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 CALCBP10092 127 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 RALAP11233 206 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 CYP2F1P24903 491 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 PRDX6P30041 224 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 CSTF2P33240 577 aaKnown RBP eCLIP5.32□□□□□ -1.56
SCFD1-208ENST00000553278 GLUD2P49448 558 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 TNFSF10P50591 281 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 BRWD1-AS2P59051 145 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 BNC1Q01954 994 aa5.32□□□□□ -1.56
SCFD1-208ENST00000553278 RELQ04864 619 aaPredicted RBP5.32□□□□□ -1.56
SCFD1-208ENST00000553278 DPTQ07507 201 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms