RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 OR2T11Q8NH01 316 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 S100ZQ8WXG8 99 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 RERGQ96A58 199 aaPredicted RBP15.16■□□□□ 0.02
CUX1-211ENST00000546411 COX4I2Q96KJ9 171 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 SSR3Q9UNL2 185 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 LOXHD1Q8IVV2 1947 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 E2F3O00716 465 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 GMFGO60234 142 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 SNX4O95219 450 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 GSRP00390 522 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 HOXC13P31276 330 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 AVPR1BP47901 424 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 NCBP2P52298 156 aaKnown RBP eCLIP15.15■□□□□ 0.026e-7■■□□□ 13.5
CUX1-211ENST00000546411 DSTNP60981 165 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 LSAMPQ13449 338 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 KRR1Q13601 381 aaKnown RBP15.15■□□□□ 0.02
CUX1-211ENST00000546411 SPIN4Q56A73 249 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 HUS1BQ8NHY5 278 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 FIBINQ8TAL6 211 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 ISL2Q96A47 359 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 CNPPD1Q9BV87 410 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 FAM120CQ9NX05 1096 aaKnown RBP15.15■□□□□ 0.02
CUX1-211ENST00000546411 TMED5Q9Y3A6 229 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 ABCB7O75027 752 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 ETFAP13804 333 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 TACR1P25103 407 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 IL12AP29459 219 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 GRIK2Q13002 908 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 PPIGQ13427 754 aaKnown RBP eCLIP15.15■□□□□ 0.029e-7■■■□□ 18.1
CUX1-211ENST00000546411 TYSND1Q2T9J0 566 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 ZNF805Q5CZA5 627 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 RBM48Q5RL73 367 aaKnown RBP15.15■□□□□ 0.02
CUX1-211ENST00000546411 Q6ZSR9 355 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 TEX26Q8N6G2 289 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 BPIFB1Q8TDL5 484 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 JPH3Q8WXH2 748 aaPredicted RBP15.15■□□□□ 0.02
CUX1-211ENST00000546411 ZBED6CLQ96FA7 236 aaPredicted RBP15.15■□□□□ 0.02
CUX1-211ENST00000546411 C17orf62Q9BQA9 187 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 WDR12Q9GZL7 423 aaKnown RBP15.15■□□□□ 0.02
CUX1-211ENST00000546411 CARS2Q9HA77 564 aaKnown RBP15.15■□□□□ 0.02
CUX1-211ENST00000546411 SOHLH2Q9NX45 425 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 C8BP07358 591 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 HLA-FP30511 346 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 ACTR1BP42025 376 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 PRMT2P55345 433 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 ACTR1AP61163 376 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 TBPL1P62380 186 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 GRIN2CQ14957 1233 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 ZNF554Q86TJ5 538 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 DOK4Q8TEW6 326 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 SLC5A11Q8WWX8 675 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 CROCCQ5TZA2 2017 aa15.15■□□□□ 0.02
CUX1-211ENST00000546411 SBF2Q86WG5 1849 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 A0A1B0GTL3 188 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 C1QAP02745 245 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 SAGP10523 405 aaPredicted RBP15.14■□□□□ 0.01
CUX1-211ENST00000546411 ZNF10P21506 573 aaPredicted RBP15.14■□□□□ 0.01
CUX1-211ENST00000546411 NT5EP21589 574 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 PSMA1P25786 263 aaKnown RBP15.14■□□□□ 0.01
CUX1-211ENST00000546411 CLDN8P56748 225 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 LRRC32Q14392 662 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 COLEC12Q5KU26 742 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 DNAJB8Q8NHS0 232 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 ZNF514Q96K75 400 aaPredicted RBP15.14■□□□□ 0.01
CUX1-211ENST00000546411 P2RY13Q9BPV8 354 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 RSPH9Q9H1X1 276 aaPredicted RBP15.14■□□□□ 0.01
CUX1-211ENST00000546411 C11orf49Q9H6J7 331 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 ERVK-18Q9QC07 812 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 PTBP2Q9UKA9 531 aaKnown RBP15.14■□□□□ 0.01
CUX1-211ENST00000546411 N6AMT1Q9Y5N5 214 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 ACOT8O14734 319 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 APOL3O95236 402 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 CH25HO95992 272 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 GDI1P31150 447 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 POLR2IP36954 125 aaKnown RBP15.14■□□□□ 0.01
CUX1-211ENST00000546411 MAGEA10P43363 369 aaPredicted RBP15.14■□□□□ 0.01
CUX1-211ENST00000546411 ZNF763Q0D2J5 394 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 NFE2L1Q14494 772 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 PLEKHS1Q5SXH7 462 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 SLC39A5Q6ZMH5 540 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 PRR23BQ6ZRT6 265 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 ZNF438Q7Z4V0 828 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 REM2Q8IYK8 340 aaPredicted RBP15.14■□□□□ 0.01
CUX1-211ENST00000546411 AQP11Q8NBQ7 271 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 OR52L1Q8NGH7 329 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 OR9A1PQ8NGU1 263 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 ZFAND2BQ8WV99 257 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 POP5Q969H6 163 aaKnown RBP15.14■□□□□ 0.01
CUX1-211ENST00000546411 SLC35G5Q96KT7 338 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 DPEP2Q9H4A9 486 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 TRIM39Q9HCM9 518 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 FAM118AQ9NWS6 357 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 ZDHHC7Q9NXF8 308 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 LHX3Q9UBR4 397 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 ASB1Q9Y576 335 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 ST14Q9Y5Y6 855 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 A0A096LPI6 279 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 TCRBV3S1A0A5B6 114 aa15.14■□□□□ 0.01
CUX1-211ENST00000546411 TPP2P29144 1249 aaPredicted RBP15.14■□□□□ 0.01
CUX1-211ENST00000546411 RPL4P36578 427 aaKnown RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms