RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 GAPDHSO14556 408 aaPredicted RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 EPHB6O15197 1021 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 PRPF4O43172 522 aaKnown RBP eCLIP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 KDM1AO60341 852 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 NRP2O60462 931 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 SRPX2O60687 465 aaPredicted RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 DNAJA2O60884 412 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 CTSVO60911 334 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 CLEC3AO75596 197 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 SRP72O76094 671 aaKnown RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 VSIG8P0DPA2 414 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 ATP1A3P13637 1013 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 TPP2P29144 1249 aaPredicted RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 PEX19P40855 299 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 CYB561P49447 251 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 PRLHRP49683 370 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 AGFG1P52594 562 aaKnown RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 JAM2P57087 298 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 TAS2R50P59544 299 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 PPIAP62937 165 aaKnown RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 GBE1Q04446 702 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 DMTNQ08495 405 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 SLC10A2Q12908 348 aaPredicted RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 PAFAH1B3Q15102 231 aaKnown RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 KRTAP24-1Q3LI83 254 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 SYTL3Q4VX76 610 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 SIRPB2Q5JXA9 342 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 PLAG1Q6DJT9 500 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 KIAA0930Q6ICG6 404 aaPredicted RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 TMEM205Q6UW68 189 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 C8orf86Q6ZUL3 223 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 MICALCLQ6ZW33 695 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 TAS2R42Q7RTR8 314 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 RPS19BP1Q86WX3 136 aaKnown RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 HSCBQ8IWL3 235 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 TBC1D21Q8IYX1 336 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 SLC5A8Q8N695 610 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 CLDN19Q8N6F1 224 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 POGLUT1Q8NBL1 392 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 OR4K2Q8NGD2 314 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 ELMO1Q92556 727 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 RNASE6Q93091 150 aaKnown RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 PIGTQ969N2 578 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 SLC22A18Q96BI1 424 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 ZNF669Q96BR6 464 aaPredicted RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 ZNF830Q96NB3 372 aaPredicted RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 COPS8Q99627 209 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 CNPPD1Q9BV87 410 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 C19orf24Q9BVV8 132 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 SARGQ9BW04 601 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 WNT10AQ9GZT5 417 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 SLC25A51Q9H1U9 297 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 TRABDQ9H4I3 376 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 LDAHQ9H6V9 325 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 EXO5Q9H790 373 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 VPS37BQ9H9H4 285 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 UBTD1Q9HAC8 227 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 MKKSQ9NPJ1 570 aaPredicted RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 C14orf105Q9NVL8 296 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 TAB2Q9NYJ8 693 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 IMPACTQ9P2X3 320 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 C19orf25Q9UFG5 118 aaPredicted RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 MCM8Q9UJA3 840 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 SLC39A10Q9ULF5 831 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 KLF13Q9Y2Y9 288 aaPredicted RBP4.47□□□□□ -1.69
LIMS1-214ENST00000542845 ATP6V1DQ9Y5K8 247 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 ARL5AQ9Y689 179 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 FAM169AQ9Y6X4 670 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 ATRQ13535 2644 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 MXRA5Q9NR99 2828 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 ARHGAP21Q5T5U3 1957 aa4.47□□□□□ -1.69
LIMS1-214ENST00000542845 EML6Q6ZMW3 1958 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 IGLV3-12A0A075B6K2 115 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 A0A0A6YYK5 440 aaPredicted RBP4.46□□□□□ -1.7
LIMS1-214ENST00000542845 A0A1W2PPR1 153 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 C2orf81A6NN90 581 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 G3V3Y1 287 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 QSOX1O00391 747 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 DDX3XO00571 662 aaKnown RBP eCLIP4.46□□□□□ -1.7
LIMS1-214ENST00000542845 CCL22O00626 93 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 BCKDKO14874 412 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 CASKO14936 926 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 AP2A1O95782 977 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 FTLP02792 175 aaPredicted RBP4.46□□□□□ -1.7
LIMS1-214ENST00000542845 PRSS56P0CW18 603 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 TPH1P17752 444 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 CD9P21926 228 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 PSMB5P28074 263 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 PCK1P35558 622 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 CDKN1CP49918 316 aaPredicted RBP4.46□□□□□ -1.7
LIMS1-214ENST00000542845 ASCL1P50553 236 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 WNT3P56703 355 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 TSTA3Q13630 321 aaPredicted RBP4.46□□□□□ -1.7
LIMS1-214ENST00000542845 DPYSL3Q14195 570 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 EXT1Q16394 746 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 HKDC1Q2TB90 917 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 CHRFAM7AQ494W8 412 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 SFT2D3Q587I9 215 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 TMEM201Q5SNT2 666 aa4.46□□□□□ -1.7
LIMS1-214ENST00000542845 CCDC183Q5T5S1 534 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms