RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 ZBTB24O43167 697 aaPredicted RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 CREG1O75629 220 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 FHP07954 510 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 POU2F1P14859 743 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 NFKB1P19838 968 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 PTPN11Q06124 597 aaPredicted RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 ST3GAL4Q11206 333 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 STX4Q12846 297 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 CAMK2GQ13555 558 aaPredicted RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 MED22Q15528 200 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 SMAD2Q15796 467 aaKnown RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 EML3Q32P44 896 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 ERFEQ4G0M1 354 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 RAB6CQ53S08 254 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 TEX30Q5JUR7 227 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 FAHD1Q6P587 224 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 C3P1Q6ZMU1 363 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 RPS27LQ71UM5 84 aaKnown RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 RHOUQ7L0Q8 258 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 SHFQ7M4L6 423 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 MIB1Q86YT6 1006 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 MFSD6LQ8IWD5 586 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 KRT78Q8N1N4 520 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 TMEM132CQ8N3T6 1108 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 C2CD4AQ8NCU7 369 aaPredicted RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 OR9Q1Q8NGQ5 310 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 ULK4Q96C45 1275 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 PGAP3Q96FM1 320 aaPredicted RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 OTUB1Q96FW1 271 aaPredicted RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 MRPL48Q96GC5 212 aaKnown RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 MYO19Q96H55 970 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 TEX37Q96LM6 180 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 TCEAL7Q9BRU2 100 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 PTDSS2Q9BVG9 487 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 SLC29A3Q9BZD2 475 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 ARHGAP39Q9C0H5 1083 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 RAB6CQ9H0N0 254 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 PDP1Q9P0J1 537 aaPredicted RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 ZNF490Q9ULM2 529 aaPredicted RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 SSR3Q9UNL2 185 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 FZD1Q9UP38 647 aa12.03□□□□□ -0.48
USP3-203ENST00000538686 SAMD4AQ9UPU9 718 aaKnown RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 SAMHD1Q9Y3Z3 626 aaKnown RBP12.03□□□□□ -0.48
USP3-203ENST00000538686 FAM220BPB1ANY3 271 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 E2F3O00716 465 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 ADAM12O43184 909 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 AKAP8O43823 692 aaKnown RBP12.02□□□□□ -0.48
USP3-203ENST00000538686 DGAT1O75907 488 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 CFDP00746 253 aaPredicted RBP12.02□□□□□ -0.48
USP3-203ENST00000538686 HBQ1P09105 142 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 LINC00032P0C843 101 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 CYP2B6P20813 491 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 HSPA7P48741 367 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 GPR143P51810 404 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 ACLYP53396 1101 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 TGFB2P61812 414 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 ZNF628Q5EBL2 1059 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 PCID2Q5JVF3 399 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 RTP2Q5QGT7 225 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 METTL23Q86XA0 190 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 MICALL2Q8IY33 904 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 DCBLD1Q8N8Z6 715 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 TMIEQ8NEW7 156 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 ATP6V1C2Q8NEY4 427 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 NANPQ8TBE9 248 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 ELP5Q8TE02 316 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 SFT2D1Q8WV19 159 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 PCNPQ8WW12 178 aaKnown RBP12.02□□□□□ -0.48
USP3-203ENST00000538686 SCMH1Q96GD3 660 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 TRMT2BQ96GJ1 504 aaKnown RBP12.02□□□□□ -0.48
USP3-203ENST00000538686 TOX2Q96NM4 488 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 TUBB1Q9H4B7 451 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 UTS2RQ9UKP6 389 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 ENTPD4Q9Y227 616 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 AHDC1Q5TGY3 1603 aaPredicted RBP12.02□□□□□ -0.48
USP3-203ENST00000538686 LY75O60449 1722 aa12.02□□□□□ -0.48
USP3-203ENST00000538686 HYKKA2RU49 373 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 ARGFXA6NJG6 315 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 DBX1A6NMT0 343 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 CASC3O15234 703 aaKnown RBP12.02□□□□□ -0.49
USP3-203ENST00000538686 MFSD11O43934 449 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 DPM1O60762 260 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 GMPSP49915 693 aaPredicted RBP12.02□□□□□ -0.49
USP3-203ENST00000538686 ITGA1P56199 1179 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 EEF1A1P68104 462 aaKnown RBP12.02□□□□□ -0.49
USP3-203ENST00000538686 EEF1A2Q05639 463 aaKnown RBP12.02□□□□□ -0.49
USP3-203ENST00000538686 PLD1Q13393 1074 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 PUM1Q14671 1186 aaKnown RBP eCLIP12.02□□□□□ -0.49
USP3-203ENST00000538686 SSX1Q16384 188 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 MICBQ29980 383 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 EEF1A1P5Q5VTE0 462 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 PKN3Q6P5Z2 889 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 ZNF549Q6P9A3 640 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 PGAP1Q75T13 922 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 PDZD4Q76G19 769 aaPredicted RBP12.02□□□□□ -0.49
USP3-203ENST00000538686 ZER1Q7Z7L7 766 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 CCNYQ8ND76 341 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 OR6C4Q8NGE1 309 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 PHOSPHO2Q8TCD6 241 aa12.02□□□□□ -0.49
USP3-203ENST00000538686 SPOCK3Q9BQ16 436 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms