RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 SLBPQ14493 270 aaKnown RBP eCLIP13.79□□□□□ -0.2
CPSF1-206ENST00000531480 UNC50Q53HI1 259 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 XKR6Q5GH73 641 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 LIPJQ5W064 366 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 TMIGD1Q6UXZ0 262 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 KRT78Q8N1N4 520 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 TBC1D19Q8N5T2 526 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 CSNK1A1LQ8N752 337 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 TTC29Q8NA56 475 aaPredicted RBP13.79□□□□□ -0.2
CPSF1-206ENST00000531480 GALNT6Q8NCL4 622 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 TTLQ8NG68 377 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 NT5CQ8TCD5 201 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 CREB3L4Q8TEY5 395 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 KCNE4Q8WWG9 221 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 RERGQ96A58 199 aaPredicted RBP13.79□□□□□ -0.2
CPSF1-206ENST00000531480 TLCD1Q96CP7 247 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 MVB12AQ96EY5 273 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 ATP6V1G3Q96LB4 118 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 NSUN5Q96P11 429 aaKnown RBP13.79□□□□□ -0.2
CPSF1-206ENST00000531480 TMEM237Q96Q45 408 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 RHBGQ9H310 441 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 C12orf65Q9H3J6 166 aaKnown RBP13.79□□□□□ -0.2
CPSF1-206ENST00000531480 IPPKQ9H8X2 491 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 AKIRIN1Q9H9L7 192 aaPredicted RBP13.79□□□□□ -0.2
CPSF1-206ENST00000531480 TMBIM4Q9HC24 238 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 LHX9Q9NQ69 397 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 CUTCQ9NTM9 273 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 OXSMQ9NWU1 459 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 PADI1Q9ULC6 663 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 LHX6Q9UPM6 363 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 RUVBL1Q9Y265 456 aaKnown RBP13.79□□□□□ -0.2
CPSF1-206ENST00000531480 RAXQ9Y2V3 346 aa13.79□□□□□ -0.2
CPSF1-206ENST00000531480 DSPP15924 2871 aaKnown RBP13.78□□□□□ -0.2
CPSF1-206ENST00000531480 A0A1B0GX78 115 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 H0YIV9 168 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 DSCR3O14972 297 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 PRPF4O43172 522 aaKnown RBP eCLIP13.78□□□□□ -0.2
CPSF1-206ENST00000531480 OR1F1O43749 312 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 H2AFYO75367 372 aaKnown RBP13.78□□□□□ -0.2
CPSF1-206ENST00000531480 TBX6O95947 436 aaPredicted RBP13.78□□□□□ -0.2
CPSF1-206ENST00000531480 CAPN1P07384 714 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 MYL2P10916 166 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 CPA3P15088 417 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 HNF4AP41235 474 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 IRF8Q02556 426 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 TRAF3Q13114 568 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 PCLAFQ15004 111 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 TGIF1Q15583 401 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 MUM1Q2TAK8 710 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 HKDC1Q2TB90 917 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 ADPRMQ3LIE5 342 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 GGTA1PQ4G0N0 100 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 PAGE2BQ5JRK9 111 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 GRHL2Q6ISB3 625 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 TMEM214Q6NUQ4 689 aaKnown RBP13.78□□□□□ -0.2
CPSF1-206ENST00000531480 VN1R5Q7Z5H4 357 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 ASPGQ86U10 573 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 CACNA2D3Q8IZS8 1091 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 AFAP1L2Q8N4X5 818 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 CAMKVQ8NCB2 501 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 TRPV3Q8NET8 790 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 OR52B6Q8NGF0 335 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 TCP10LQ8TDR4 215 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 SLC13A3Q8WWT9 602 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 NDC1Q9BTX1 674 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 SLC6A16Q9GZN6 736 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 STARD5Q9NSY2 213 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 SLC17A7Q9P2U7 560 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 MID2Q9UJV3 735 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 PCDHGA6Q9Y5G7 932 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 SLC22A7Q9Y694 548 aa13.78□□□□□ -0.2
CPSF1-206ENST00000531480 C21orf140B9A014 251 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 FOXS1O43638 330 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 CLEC3AO75596 197 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 SERPINA6P08185 405 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 SLC35G6P0C7Q6 338 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 SMIM10L1P0DMW3 83 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 SERPINB1P30740 379 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 ATP1A2P50993 1020 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 SLC18A1P54219 525 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 SNRPNP63162 240 aaKnown RBP13.77□□□□□ -0.21
CPSF1-206ENST00000531480 LCN10Q6JVE6 187 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 PRMT9Q6P2P2 845 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 FAM198BQ6UWH4 519 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 SPACA3Q8IXA5 215 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.77□□□□□ -0.21
CPSF1-206ENST00000531480 OR6Y1Q8NGX8 325 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 FAM76AQ8TAV0 307 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 CHD6Q8TD26 2715 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 UBE2E3Q969T4 207 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 CLIP3Q96DZ5 547 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 MOCOSQ96EN8 888 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 SMIM10Q96HG1 83 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 FAM111AQ96PZ2 611 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 NLNQ9BYT8 704 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 AICDAQ9GZX7 198 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 GSTO2Q9H4Y5 243 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 NOL11Q9H8H0 719 aaKnown RBP13.77□□□□□ -0.21
CPSF1-206ENST00000531480 SLC22A11Q9NSA0 550 aa13.77□□□□□ -0.21
CPSF1-206ENST00000531480 DHCR7Q9UBM7 475 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms