RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 TMEM245Q9H330 911 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 TRIM45Q9H8W5 580 aaPredicted RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 CTPS2Q9NRF8 586 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 FEZF1A0PJY2 475 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 FAM220BPB1ANY3 271 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 OR10H3O60404 316 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 ALDH4A1P30038 563 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 SCARB2Q14108 478 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 HEPACAMQ14CZ8 416 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 ZNF77Q15935 545 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 GPAT3Q53EU6 434 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 CDKL4Q5MAI5 379 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 C9orf64Q5T6V5 341 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 COMMD6Q7Z4G1 85 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 RNF130Q86XS8 419 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 DCUN1D3Q8IWE4 304 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 CHERPQ8IWX8 916 aaKnown RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 JPH3Q8WXH2 748 aaPredicted RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 FAIM2Q9BWQ8 316 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 SORBS1Q9BX66 1292 aaKnown RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 CARS2Q9HA77 564 aaKnown RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 FZD3Q9NPG1 666 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 KLHL42Q9P2K6 505 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 FBXO10Q9UK96 956 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 MYOFQ9NZM1 2061 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 LOC100506127A0A0U1RQW1 187 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 PIPSLA2A3N6 862 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 XPNPEP2O43895 674 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 TPST2O60704 377 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 MITFO75030 526 aaPredicted RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 UGT2B11O75310 529 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 ZNF8P17098 575 aaPredicted RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 ITGA2P17301 1181 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 TNFRSF1BP20333 461 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 BUD31P41223 144 aaPredicted RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 GRIA2P42262 883 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 CCR8P51685 355 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 TXNL4AP83876 142 aaKnown RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 EIF4HQ15056 248 aaKnown RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 TEAD4Q15561 434 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 TMEM215Q68D42 235 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 ARMC6Q6NXE6 501 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 RNF168Q8IYW5 571 aaPredicted RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 RAB8BQ92930 207 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 ARRDC3Q96B67 414 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 DACH2Q96NX9 599 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 IKZF5Q9H5V7 419 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 REEP4Q9H6H4 257 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 C5AR2Q9P296 337 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 SEC14L3Q9UDX4 400 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 ASPDHA6ND91 283 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 CNOT3O75175 753 aaKnown RBP9.78□□□□□ -0.84
MCF2-209ENST00000520602 RASGRP1O95267 797 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 CTSLP07711 333 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 IL3P08700 152 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 ALPPL2P10696 532 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 ETFAP13804 333 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 IMPA1P29218 277 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 MMP12P39900 470 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 PFN3P60673 137 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 TGM3Q08188 693 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 ZBED5Q49AG3 693 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 IFI44LQ53G44 452 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 CYBRD1Q53TN4 286 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 ADNP2Q6IQ32 1131 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 KRT73Q86Y46 540 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 NRSN1Q8IZ57 195 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 ZNF740Q8NDX6 193 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 GIPC3Q8TF64 312 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 SMPDL3AQ92484 453 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 THUMPD1Q9NXG2 353 aaKnown RBP9.78□□□□□ -0.84
MCF2-209ENST00000520602 ZNF236Q9UL36 1845 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 ATG2BQ96BY7 2078 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 GABRR3A8MPY1 467 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 FOXD2O60548 495 aaPredicted RBP9.78□□□□□ -0.84
MCF2-209ENST00000520602 HTR1BP28222 390 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 DNAJA1P31689 397 aaKnown RBP9.78□□□□□ -0.84
MCF2-209ENST00000520602 RXRGP48443 463 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 PRLHRP49683 370 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 ANXA11P50995 505 aaKnown RBP9.78□□□□□ -0.84
MCF2-209ENST00000520602 GALK1P51570 392 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 CCR3P51677 355 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 RPS26P62854 115 aaKnown RBP9.78□□□□□ -0.84
MCF2-209ENST00000520602 CDK6Q00534 326 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 UBE3AQ05086 875 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 ATP1A4Q13733 1029 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 FOXB2Q5VYV0 432 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 GRHL2Q6ISB3 625 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 METTL2BQ6P1Q9 378 aaKnown RBP9.78□□□□□ -0.84
MCF2-209ENST00000520602 EIF3MQ7L2H7 374 aaKnown RBP9.78□□□□□ -0.84
MCF2-209ENST00000520602 C12orf40Q86WS4 652 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 SVOPQ8N4V2 548 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 LCN9Q8WX39 176 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 ECHDC3Q96DC8 303 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 OTUB1Q96FW1 271 aaPredicted RBP9.78□□□□□ -0.84
MCF2-209ENST00000520602 PLEKHA8Q96JA3 519 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 KCNC2Q96PR1 638 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 YIPF2Q9BWQ6 316 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 CDC14AQ9UNH5 594 aa9.78□□□□□ -0.84
MCF2-209ENST00000520602 PCDHB11Q9Y5F2 797 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms