RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 OR56A1Q8NGH5 318 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 OR51B5Q9H339 312 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 TMEM9Q9P0T7 183 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 ETV3P41162 512 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 STK19P49842 368 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-215ENST00000496447 VBP1P61758 197 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 DUOXA1Q1HG43 343 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 UBE2J2Q8N2K1 259 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 FEM1AQ9BSK4 669 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 CD320Q9NPF0 282 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 CENPMQ9NSP4 180 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 SUSD2Q9UGT4 822 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 COL1A1P02452 1464 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-215ENST00000496447 KCPQ6ZWJ8 1503 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 H3BSA7 217 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 AXIN1O15169 862 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 TSPAN6O43657 245 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 RNGTTO60942 597 aaKnown RBP12.75□□□□□ -0.37
PTPRF-215ENST00000496447 TSPAN5P62079 268 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 CLEC12AQ5QGZ9 265 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 DNM1P34Q6PK57 102 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 CILP2Q8IUL8 1156 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 OR10G2Q8NGC3 310 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 PHOSPHO1Q8TCT1 267 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 UFD1Q92890 307 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 LGR4Q9BXB1 951 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 ADAMTS10Q9H324 1103 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 GPR34Q9UPC5 381 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 VEGFDO43915 354 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 HSD11B1P28845 292 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF41P51814 821 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-215ENST00000496447 PER3P56645 1201 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 ASTE1Q2TB18 679 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-215ENST00000496447 PNPLA2Q96AD5 504 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 TBX5Q99593 518 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 MED28Q9H204 178 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 TTYH1Q9H313 450 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-215ENST00000496447 PEAK1Q9H792 1746 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 GPR32O75388 356 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 KAT7O95251 611 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 GSRP00390 522 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 HMGN1P05114 100 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF865P0CJ78 1059 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-215ENST00000496447 NR2C1P13056 603 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 ANXA8P13928 327 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 CLCN2P51788 898 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 XKP51811 444 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 ADNP2Q6IQ32 1131 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 SYCE2Q6PIF2 218 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 OR52E4Q8NGH9 312 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 LRIG1Q96JA1 1093 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 MGME1Q9BQP7 344 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 EBF4Q9BQW3 602 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 SEC61A2Q9H9S3 476 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 ZIM2Q9NZV7 527 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 RABL2BQ9UNT1 228 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 MYADML2A6NDP7 307 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 PDCD5O14737 125 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 RAB2AP61019 212 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 DCAF12L1Q5VU92 463 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 METTL27Q8N6F8 245 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-215ENST00000496447 DMRTB1Q96MA1 342 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 NODALQ96S42 347 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 GAL3ST1Q99999 423 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 OR8D2Q9GZM6 311 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.74□□□□□ -0.37
PTPRF-215ENST00000496447 ACTL8Q9H568 366 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 IL21RQ9HBE5 538 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 MRM3Q9HC36 420 aaKnown RBP12.74□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF623O75123 536 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 OPN1SWP03999 348 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 BMPR1AP36894 532 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 MXD1Q05195 221 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 RING1Q06587 406 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 TMEM198Q66K66 360 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 ZDHHC24Q6UX98 284 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 OR8H3Q8N146 312 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 GEMIN6Q8WXD5 167 aaKnown RBP12.74□□□□□ -0.37
PTPRF-215ENST00000496447 PTGES2Q9H7Z7 377 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 C2orf78A6NCI8 922 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 FHP07954 510 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 PABPC4LP0CB38 370 aaKnown RBP12.74□□□□□ -0.37
PTPRF-215ENST00000496447 MTHFD1P11586 935 aaKnown RBP12.74□□□□□ -0.37
PTPRF-215ENST00000496447 GP1BBP13224 206 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 AP3S2P59780 193 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 FAM214AQ32MH5 1076 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 PLEKHS1Q5SXH7 462 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 QSOX2Q6ZRP7 698 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 ANKFN1Q8N957 763 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 HERC2P3Q9BVR0 1158 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 KNDC1Q76NI1 1749 aa12.74□□□□□ -0.37
PTPRF-215ENST00000496447 LCHNA4D1U4 455 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 SNX4O95219 450 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 EBLN1P0CF75 366 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 EEFSECP57772 596 aaKnown RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 KCNC3Q14003 757 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 KIAA1161Q6NSJ0 714 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 DPY19L3Q6ZPD9 716 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 PMM1Q92871 262 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 MMABQ96EY8 250 aaPredicted RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms