RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CCDC149Q6ZUS6 474 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 THOC6Q86W42 341 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 RASGEF1AQ8N9B8 481 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 LEMD2Q8NC56 503 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 OR5K1Q8NHB7 308 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 CMTM7Q96FZ5 175 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 TMEM121BQ9BXQ6 578 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 THG1LQ9NWX6 298 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 SNX8Q9Y5X2 465 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 AQP9O43315 295 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 RHOP08100 348 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 JUNBP17275 347 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 PPM1AP35813 382 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 KRT20P35900 424 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 KIR3DL1P43629 444 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 NLGN4XQ8N0W4 816 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 PYURFQ96I23 114 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 OR4K3Q96R72 315 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 RUBCNLQ9H714 662 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 SLC6A14Q9UN76 642 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 TESMINQ9Y4I5 508 aa15.95■□□□□ 0.14
CCDC88B-210ENST00000494566 FPGTO14772 594 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 ERN1O75460 977 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 SCELO95171 688 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 SLC16A8O95907 504 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 LAMP1P11279 417 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 COX7A2P14406 83 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 SPNP16150 400 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 ENGP17813 658 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 POLR2EP19388 210 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 XPAP23025 273 aaPredicted RBP15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 VIPR1P32241 457 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 HOXD12P35452 270 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 CPZQ66K79 652 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 CALHM3Q86XJ0 350 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 CCDC71Q8IV32 467 aaPredicted RBP15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 L3MBTL4Q8NA19 623 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 SH3KBP1Q96B97 665 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 SH3GL1Q99961 368 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 EMILIN2Q9BXX0 1053 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 ASIC5Q9NY37 505 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 SPEGQ15772 3267 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 SOBPA7XYQ1 873 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 PSMD11O00231 422 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 SAP18O00422 153 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 PRMT2P55345 433 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 POLR2LP62875 67 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 ACOX1Q15067 660 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 OXA1LQ15070 435 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 LRIF1Q5T3J3 769 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 PLPP6Q8IY26 295 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 ZNF513Q8N8E2 541 aaPredicted RBP15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 ASZ1Q8WWH4 475 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 ZHX1-C8orf76Q96EF9 292 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 YTHDF1Q9BYJ9 559 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 ASPSCR1Q9BZE9 553 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 RMND5AQ9H871 391 aa15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 CXXC1Q9P0U4 656 aaPredicted RBP15.94■□□□□ 0.14
CCDC88B-210ENST00000494566 A8MV72 311 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 MAGEB17A8MXT2 336 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 FAM220BPB1ANY3 271 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 K7ESM1 405 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 SSX4O60224 188 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 CYP7B1O75881 506 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 OXSR1O95747 527 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 CHRM5P08912 532 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 HLA-EP13747 358 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 NRIP1P48552 1158 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 RPS3AP61247 264 aaKnown RBP15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 HKDC1Q2TB90 917 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 PLEKHS1Q5SXH7 462 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 ATG9BQ674R7 924 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 AGTRAPQ6RW13 159 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 HEATR4Q86WZ0 1026 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 C2orf73Q8N5S3 287 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 POC5Q8NA72 575 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 MCFD2Q8NI22 146 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 LGALS12Q96DT0 336 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 MRGPRX3Q96LB0 322 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 NRTNQ99748 197 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 AKIP1Q9NQ31 210 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 KRT84Q9NSB2 600 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 CLIC1O00299 241 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 KPNA3O00505 521 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 PRPS2P11908 318 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 JUPP14923 745 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 EPCAMP16422 314 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 HOXB9P17482 250 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 LIPAP38571 399 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 HNMTP50135 292 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 PTPN5P54829 565 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 GRASPQ7Z6J2 395 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 C12orf40Q86WS4 652 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 UTP15Q8TED0 518 aaKnown RBP15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 LRRC3BQ96PB8 259 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 AASDHPPTQ9NRN7 309 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 ATAD3AQ9NVI7 634 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 SH2B3Q9UQQ2 575 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 LTBP2Q14767 1821 aa15.93■□□□□ 0.14
CCDC88B-210ENST00000494566 CNOT3O75175 753 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms