RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 CASP2P42575 452 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 FOXA1P55317 472 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 RPS15AP62244 130 aaKnown RBP16.44■□□□□ 0.22
LIME1-208ENST00000493265 TUBB3Q13509 450 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 CAMK2BQ13554 666 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 TCHHL1Q5QJ38 904 aaPredicted RBP16.44■□□□□ 0.22
LIME1-208ENST00000493265 SH2D4BQ5SQS7 431 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 CLEC6AQ6EIG7 209 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 RNF44Q7L0R7 432 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 RAB11FIP2Q7L804 512 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 TMPRSS12Q86WS5 348 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.44■□□□□ 0.22
LIME1-208ENST00000493265 RNF175Q8N4F7 328 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 ANKRD53Q8N9V6 530 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 MFSD9Q8NBP5 474 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 RAB3IL1Q8TBN0 382 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 RERGQ96A58 199 aaPredicted RBP16.44■□□□□ 0.22
LIME1-208ENST00000493265 CMKLR1Q99788 373 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 CTRCQ99895 268 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 TRPS1Q9UHF7 1281 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 PILRAQ9UKJ1 303 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 ZNF490Q9ULM2 529 aaPredicted RBP16.44■□□□□ 0.22
LIME1-208ENST00000493265 PLCL2Q9UPR0 1127 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 PCDHGA4Q9Y5G9 962 aa16.44■□□□□ 0.22
LIME1-208ENST00000493265 KCNE1BA0A087WTH5 132 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 ANKDD1BA6NHY2 528 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 EIF4E1BA6NMX2 242 aaKnown RBP16.43■□□□□ 0.22
LIME1-208ENST00000493265 H0YGG7 62 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 UGDHO60701 494 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 ITIH1P19827 911 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 SCTRP47872 440 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 NEK2P51955 445 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 MAPK10P53779 464 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 ARF3P61204 181 aaPredicted RBP16.43■□□□□ 0.22
LIME1-208ENST00000493265 C3orf38Q5JPI3 329 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 SCIMPQ6UWF3 145 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 OR7G3Q8NG95 312 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 UBE2E3Q969T4 207 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 GRAMD1AQ96CP6 724 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 MAGEB18Q96M61 343 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 DCBLD2Q96PD2 775 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 MTERF1Q99551 399 aaKnown RBP16.43■□□□□ 0.22
LIME1-208ENST00000493265 SPRTNQ9H040 489 aaPredicted RBP16.43■□□□□ 0.22
LIME1-208ENST00000493265 ELOVL6Q9H5J4 265 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 FANCEQ9HB96 536 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 FGF21Q9NSA1 209 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 PISDQ9UG56 409 aa16.43■□□□□ 0.22
LIME1-208ENST00000493265 CCDC187A0A096LP49 1063 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 MANBAO00462 879 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 AZIN1O14977 448 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 NDUFS4O43181 175 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 ENO1P06733 434 aaKnown RBP16.42■□□□□ 0.22
LIME1-208ENST00000493265 JMJD7P0C870 316 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 ATXN8OSP0DMR3 200 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 MDH1P40925 334 aaKnown RBP16.42■□□□□ 0.22
LIME1-208ENST00000493265 GABRA4P48169 554 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 ACY1Q03154 408 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 PCDH1Q08174 1060 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 IFT88Q13099 833 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 GGTA1PQ4G0N0 100 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 WASHC2DQ5SRD0 308 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 FAM47EQ6ZV65 393 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 CSNK1A1LQ8N752 337 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 ZNF781Q8N8C0 355 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 OR1L3Q8NH93 324 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 REPS1Q96D71 796 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 LIN37Q96GY3 246 aaPredicted RBP16.42■□□□□ 0.22
LIME1-208ENST00000493265 MAGEB10Q96LZ2 347 aaPredicted RBP16.42■□□□□ 0.22
LIME1-208ENST00000493265 OR2A5Q96R48 311 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 HBEGFQ99075 208 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 SORT1Q99523 831 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 SLC29A3Q9BZD2 475 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 ILKAPQ9H0C8 392 aaPredicted RBP16.42■□□□□ 0.22
LIME1-208ENST00000493265 APMAPQ9HDC9 416 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 FARSBQ9NSD9 589 aaKnown RBP16.42■□□□□ 0.22
LIME1-208ENST00000493265 PNPOQ9NVS9 261 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 THAP1Q9NVV9 213 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 SLC39A1Q9NY26 324 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 ZDHHC2Q9UIJ5 367 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 SNX6Q9UNH7 406 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 TRAF6Q9Y4K3 522 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 PCDHGA11Q9Y5H2 935 aa16.42■□□□□ 0.22
LIME1-208ENST00000493265 TCP11X1B4DZS4 312 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 H0YIV9 168 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 P2RX6O15547 441 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 SNNO75324 88 aaPredicted RBP16.41■□□□□ 0.22
LIME1-208ENST00000493265 OR2B3O76000 313 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 PDYNP01213 254 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 KRT6AP02538 564 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 KRT6BP04259 564 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 KITP10721 976 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 ETV5P41161 510 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 KRT6CP48668 564 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 HTR6P50406 440 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 E2F2Q14209 437 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 HKDC1Q2TB90 917 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 FRG2Q64ET8 278 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 VN1R4Q7Z5H5 301 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 ASPGQ86U10 573 aa16.41■□□□□ 0.22
LIME1-208ENST00000493265 LAS2Q8IYD9 372 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms