RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 ANKZF1Q9H8Y5 726 aa16.49■□□□□ 0.23
MDC1-206ENST00000489540 SLC22A7Q9Y694 548 aa16.49■□□□□ 0.23
MDC1-206ENST00000489540 MGAQ8IWI9 3026 aa16.49■□□□□ 0.23
MDC1-206ENST00000489540 IGLV3-12A0A075B6K2 115 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 A0A0A6YYC8 382 aaPredicted RBP16.48■□□□□ 0.23
MDC1-206ENST00000489540 I3L1I5 382 aaPredicted RBP16.48■□□□□ 0.23
MDC1-206ENST00000489540 UBXN8O00124 270 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 PEX12O00623 359 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 CCNT2O60583 730 aaKnown RBP16.48■□□□□ 0.23
MDC1-206ENST00000489540 STATHP02808 62 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 UMODP07911 640 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 MTHFD2P13995 350 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 GLRBP48167 497 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 RGS1Q08116 209 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 PDK4Q16654 411 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 TSNAXIP1Q2TAA8 658 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 MED25Q71SY5 747 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 KRT78Q8N1N4 520 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 TMEM102Q8N9M5 508 aaPredicted RBP16.48■□□□□ 0.23
MDC1-206ENST00000489540 TTLQ8NG68 377 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 NT5CQ8TCD5 201 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 STT3BQ8TCJ2 826 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 UBTD2Q8WUN7 234 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 ESAMQ96AP7 390 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 MIEF2Q96C03 454 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 SEC16BQ96JE7 1060 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 SPSB2Q99619 263 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 MACROD1Q9BQ69 325 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 YIPF2Q9BWQ6 316 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 EPB41L4BQ9H329 900 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 NT5DC2Q9H857 520 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 ANKHQ9HCJ1 492 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 TRPC4Q9UBN4 977 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 CTSFQ9UBX1 484 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 MAP4K5Q9Y4K4 846 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 CACNA1GO43497 2377 aa16.48■□□□□ 0.23
MDC1-206ENST00000489540 IQANK1A0A1B0GTG1 560 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 NDUFS4O43181 175 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 RFPL1O75677 317 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 NSA2O95478 260 aaKnown RBP16.47■□□□□ 0.23
MDC1-206ENST00000489540 SERPIND1P05546 499 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 ZGLP1P0C6A0 271 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 MMP11P24347 488 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 VARSP26640 1264 aaKnown RBP16.47■□□□□ 0.23
MDC1-206ENST00000489540 GSTM2P28161 218 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 GCAP28676 217 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 RRADP55042 308 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 HERC3Q15034 1050 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 FBXO48Q5FWF7 155 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 NIPAL1Q6NVV3 410 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 AMER3Q8N944 861 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 KCT2Q8NC54 265 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 VPS50Q96JG6 964 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 FER1L6-AS2Q96M78 137 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 TGIF2Q9GZN2 237 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 ING2Q9H160 280 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 SPNS1Q9H2V7 528 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 MKKSQ9NPJ1 570 aaPredicted RBP16.47■□□□□ 0.23
MDC1-206ENST00000489540 ACSS2Q9NR19 701 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 SEMA3GQ9NS98 782 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 C14orf105Q9NVL8 296 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 OPTCQ9UBM4 332 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 MRPS2Q9Y399 296 aaKnown RBP16.47■□□□□ 0.23
MDC1-206ENST00000489540 LOC400499M0QZD8 3231 aa16.47■□□□□ 0.23
MDC1-206ENST00000489540 URADA6NGE7 173 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 ARGFXA6NJG6 315 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 MKRN2OSH3BPM6 223 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 K7EPI3 171 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 KLK8O60259 260 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 GFAPP14136 432 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 ALDH18A1P54886 795 aaKnown RBP16.46■□□□□ 0.23
MDC1-206ENST00000489540 LAPTM5Q13571 262 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 ATP1A4Q13733 1029 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 SLBPQ14493 270 aaKnown RBP eCLIP16.46■□□□□ 0.23
MDC1-206ENST00000489540 TBCCQ15814 346 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 PFKFB4Q16877 469 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 XKR6Q5GH73 641 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 METTL2BQ6P1Q9 378 aaKnown RBP16.46■□□□□ 0.23
MDC1-206ENST00000489540 TMIGD1Q6UXZ0 262 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 MRGPREQ86SM8 312 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 PLD6Q8N2A8 252 aaKnown RBP16.46■□□□□ 0.23
MDC1-206ENST00000489540 ANKRD53Q8N9V6 530 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 OR9A4Q8NGU2 314 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 UBLCP1Q8WVY7 318 aaPredicted RBP16.46■□□□□ 0.23
MDC1-206ENST00000489540 WDR34Q96EX3 536 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 PTCD3Q96EY7 689 aaKnown RBP16.46■□□□□ 0.23
MDC1-206ENST00000489540 EFCAB11Q9BUY7 163 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 SEMA4CQ9C0C4 833 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 SLC25A18Q9H1K4 315 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 SOX17Q9H6I2 414 aaPredicted RBP16.46■□□□□ 0.23
MDC1-206ENST00000489540 PPCSQ9HAB8 311 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 PSMC3IPQ9P2W1 217 aaPredicted RBP16.46■□□□□ 0.23
MDC1-206ENST00000489540 COPG2Q9UBF2 871 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 TMCO1Q9UM00 188 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 TNPO3Q9Y5L0 923 aaKnown RBP16.46■□□□□ 0.23
MDC1-206ENST00000489540 IGSF10Q6WRI0 2623 aa16.46■□□□□ 0.23
MDC1-206ENST00000489540 SERPINA6P08185 405 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 CASP2P42575 452 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 AGTR2P50052 363 aa16.45■□□□□ 0.22
MDC1-206ENST00000489540 FOXL2P58012 376 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms