RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CCDC138Q96M89 665 aa11.69□□□□□ -0.54
CPSF3-204ENST00000489403 NPAS2Q99743 824 aa11.69□□□□□ -0.54
CPSF3-204ENST00000489403 AARSD1Q9BTE6 412 aaKnown RBP11.69□□□□□ -0.54
CPSF3-204ENST00000489403 HES7Q9BYE0 225 aa11.69□□□□□ -0.54
CPSF3-204ENST00000489403 RBCK1Q9BYM8 510 aa11.69□□□□□ -0.54
CPSF3-204ENST00000489403 RUBCNLQ9H714 662 aa11.69□□□□□ -0.54
CPSF3-204ENST00000489403 KCNK13Q9HB14 408 aa11.69□□□□□ -0.54
CPSF3-204ENST00000489403 ANKHQ9HCJ1 492 aa11.69□□□□□ -0.54
CPSF3-204ENST00000489403 C20orf96Q9NUD7 363 aaPredicted RBP11.69□□□□□ -0.54
CPSF3-204ENST00000489403 ANKRD10Q9NXR5 420 aa11.69□□□□□ -0.54
CPSF3-204ENST00000489403 ADAMTS6Q9UKP5 1117 aa11.69□□□□□ -0.54
CPSF3-204ENST00000489403 PCDHGB6Q9Y5F9 930 aa11.69□□□□□ -0.54
CPSF3-204ENST00000489403 COMMD10Q9Y6G5 202 aa11.69□□□□□ -0.54
CPSF3-204ENST00000489403 GOLGA6L6A8MZA4 724 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 LCMT2O60294 686 aaKnown RBP11.68□□□□□ -0.54
CPSF3-204ENST00000489403 MAN1A2O60476 641 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 CDC123O75794 336 aaPredicted RBP11.68□□□□□ -0.54
CPSF3-204ENST00000489403 PTGER4P35408 488 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 MAGEA3P43357 314 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 TIAL1Q01085 375 aaKnown RBP eCLIP11.68□□□□□ -0.54
CPSF3-204ENST00000489403 RHAGQ02094 409 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 EXT1Q16394 746 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 C3AR1Q16581 482 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 MEP1AQ16819 746 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 ZNF630Q2M218 657 aaPredicted RBP11.68□□□□□ -0.54
CPSF3-204ENST00000489403 PAPD4Q6PIY7 484 aaKnown RBP11.68□□□□□ -0.54
CPSF3-204ENST00000489403 GDF7Q7Z4P5 450 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 ASPGQ86U10 573 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 SLC26A11Q86WA9 606 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 C17orf64Q86WR6 236 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 LMNTD2Q8IXW0 634 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 MCUQ8NE86 351 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 TRIM58Q8NG06 486 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 M1APQ8TC57 530 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 CALML6Q8TD86 181 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 SCMH1Q96GD3 660 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 PEX11GQ96HA9 241 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 GPR137Q96N19 417 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 PHF12Q96QT6 1004 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 ATG10Q9H0Y0 220 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 XAB2Q9HCS7 855 aaKnown RBP11.68□□□□□ -0.54
CPSF3-204ENST00000489403 MMP25Q9NPA2 562 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 CHST11Q9NPF2 352 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 KLHL1Q9NR64 748 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 TINAGQ9UJW2 476 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 FBXO5Q9UKT4 447 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 PDE10AQ9Y233 779 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 NAALAD2Q9Y3Q0 740 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 APCP25054 2843 aa11.68□□□□□ -0.54
CPSF3-204ENST00000489403 ASPDHA6ND91 283 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 ZNF860A6NHJ4 632 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 FAM227AF5H4B4 570 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 TTI1O43156 1089 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 SNRPB2P08579 225 aaKnown RBP11.67□□□□□ -0.54
CPSF3-204ENST00000489403 CCDC175P0C221 793 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 CDH1P12830 882 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 CD96P40200 585 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 CASP6P55212 293 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 ABRAXAS2Q15018 415 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 OR1C1Q15619 314 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 SFT2D3Q587I9 215 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 HSP90AA5PQ58FG0 334 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 SPINK14Q6IE38 97 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 CAPN13Q6MZZ7 669 aaPredicted RBP11.67□□□□□ -0.54
CPSF3-204ENST00000489403 AGTRAPQ6RW13 159 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 LCTLQ6UWM7 567 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 Q6ZPB1 254 aaPredicted RBP11.67□□□□□ -0.54
CPSF3-204ENST00000489403 OR5T3Q8NGG3 340 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 THAP3Q8WTV1 239 aaPredicted RBP11.67□□□□□ -0.54
CPSF3-204ENST00000489403 EEF1AKMT1Q8WVE0 214 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 SLC13A3Q8WWT9 602 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 TSLPQ969D9 159 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 SIGLEC10Q96LC7 697 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 FRMD6Q96NE9 622 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 NDNQ99608 321 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 UTP23Q9BRU9 249 aaKnown RBP11.67□□□□□ -0.54
CPSF3-204ENST00000489403 FAM167BQ9BTA0 163 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 SGPP1Q9BX95 441 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 PCBD2Q9H0N5 130 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 LANCL2Q9NS86 450 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 IARS2Q9NSE4 1012 aaKnown RBP11.67□□□□□ -0.54
CPSF3-204ENST00000489403 TRMT6Q9UJA5 497 aaKnown RBP11.67□□□□□ -0.54
CPSF3-204ENST00000489403 ZNF835Q9Y2P0 537 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 NEU2Q9Y3R4 380 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 MAD1L1Q9Y6D9 718 aa11.67□□□□□ -0.54
CPSF3-204ENST00000489403 OTOGQ6ZRI0 2925 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 GABRR3A8MPY1 467 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 C8GP07360 202 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 SLC35G6P0C7Q6 338 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 COX6B1P14854 86 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 CCND1P24385 295 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 EEF1DP29692 281 aaKnown RBP11.66□□□□□ -0.54
CPSF3-204ENST00000489403 SLC26A5P58743 744 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 ALDH6A1Q02252 535 aaKnown RBP11.66□□□□□ -0.54
CPSF3-204ENST00000489403 SP140Q13342 867 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 NAE1Q13564 534 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 USP10Q14694 798 aaKnown RBP11.66□□□□□ -0.54
CPSF3-204ENST00000489403 CDSNQ15517 529 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 NSDHLQ15738 373 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 PHKG1Q16816 387 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms