RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 OR1F1O43749 312 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 KLK8O60259 260 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 RFPL1O75677 317 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 NSA2O95478 260 aaKnown RBP17.1■□□□□ 0.33
HDAC6-225ENST00000483506 S100BP04271 92 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-225ENST00000483506 SLC35G6P0C7Q6 338 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 MMP11P24347 488 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 HSPA7P48741 367 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 SNRPNP63162 240 aaKnown RBP17.1■□□□□ 0.33
HDAC6-225ENST00000483506 E2F2Q14209 437 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 ADGRD1Q6QNK2 874 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 LRRC70Q7Z2Q7 622 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 PPP1R32Q7Z5V6 425 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 TMEM151BQ8IW70 566 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 GSPT2Q8IYD1 628 aaKnown RBP17.1■□□□□ 0.33
HDAC6-225ENST00000483506 AFAP1L2Q8N4X5 818 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 TMEM102Q8N9M5 508 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-225ENST00000483506 UHMK1Q8TAS1 419 aaKnown RBP17.1■□□□□ 0.33
HDAC6-225ENST00000483506 NT5CQ8TCD5 201 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 WDR34Q96EX3 536 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 SEC16BQ96JE7 1060 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 CD244Q9BZW8 370 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 TGIF2Q9GZN2 237 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 ANKZF1Q9H8Y5 726 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 MAP4K5Q9Y4K4 846 aa17.1■□□□□ 0.33
HDAC6-225ENST00000483506 TRIM49D1C9J1S8 452 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 UBXN8O00124 270 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 PRB1P04280 392 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 ZGLP1P0C6A0 271 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 C1GALT1C1LP0DN25 315 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 COL6A2P12110 1019 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 CXCR2P25025 360 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 FOXL2P58012 376 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 PCDH1Q08174 1060 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 ATP1A4Q13733 1029 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 SLC29A2Q14542 456 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 PDK4Q16654 411 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 CPZQ66K79 652 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 KLC3Q6P597 504 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 TIFABQ6ZNK6 161 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 MED25Q71SY5 747 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 ZNF843Q8N446 348 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 ANKRD53Q8N9V6 530 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 KCT2Q8NC54 265 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 STT3BQ8TCJ2 826 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 MMABQ96EY8 250 aaPredicted RBP17.09■□□□□ 0.33
HDAC6-225ENST00000483506 MACROD1Q9BQ69 325 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 TRIM55Q9BYV6 548 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 ING2Q9H160 280 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 SLC25A18Q9H1K4 315 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 NT5DC2Q9H857 520 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 MKKSQ9NPJ1 570 aaPredicted RBP17.09■□□□□ 0.33
HDAC6-225ENST00000483506 C14orf105Q9NVL8 296 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 ASB1Q9Y576 335 aa17.09■□□□□ 0.33
HDAC6-225ENST00000483506 A0A0A6YYC8 382 aaPredicted RBP17.08■□□□□ 0.32
HDAC6-225ENST00000483506 ESPNB1AK53 854 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 SUPT3HB4E1H0 165 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 I3L1I5 382 aaPredicted RBP17.08■□□□□ 0.32
HDAC6-225ENST00000483506 MAP2K7O14733 419 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 NDUFS4O43181 175 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 SUPT3HO75486 399 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 CEACAM4O75871 244 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 IGHEP01854 428 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 STATHP02808 62 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 SNRPAP09012 282 aaKnown RBP17.08■□□□□ 0.32
HDAC6-225ENST00000483506 EPORP19235 508 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 VARSP26640 1264 aaKnown RBP17.08■□□□□ 0.32
HDAC6-225ENST00000483506 GSTM2P28161 218 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 OTX2P32243 289 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 AVPR1BP47901 424 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 RRADP55042 308 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 OCA2Q04671 838 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 TBCCQ15814 346 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 FBXO48Q5FWF7 155 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 TECRLQ5HYJ1 363 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 LGSNQ5TDP6 509 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 PLD6Q8N2A8 252 aaKnown RBP17.08■□□□□ 0.32
HDAC6-225ENST00000483506 TRPV3Q8NET8 790 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 TTLQ8NG68 377 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 CREB3L4Q8TEY5 395 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 EXT2Q93063 718 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 ESAMQ96AP7 390 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 MIEF2Q96C03 454 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 MTBPQ96DY7 904 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 SLC6A16Q9GZN6 736 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 VPS11Q9H270 941 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 SEMA3GQ9NS98 782 aa17.08■□□□□ 0.32
HDAC6-225ENST00000483506 ARGFXA6NJG6 315 aa17.07■□□□□ 0.32
HDAC6-225ENST00000483506 PRAMEF4O60810 478 aa17.07■□□□□ 0.32
HDAC6-225ENST00000483506 CASP2P42575 452 aa17.07■□□□□ 0.32
HDAC6-225ENST00000483506 GLRBP48167 497 aa17.07■□□□□ 0.32
HDAC6-225ENST00000483506 KLC1Q07866 573 aa17.07■□□□□ 0.32
HDAC6-225ENST00000483506 RGS1Q08116 209 aa17.07■□□□□ 0.32
HDAC6-225ENST00000483506 HYAL2Q12891 473 aa17.07■□□□□ 0.32
HDAC6-225ENST00000483506 SLBPQ14493 270 aaKnown RBP eCLIP17.07■□□□□ 0.32
HDAC6-225ENST00000483506 HERC3Q15034 1050 aa17.07■□□□□ 0.32
HDAC6-225ENST00000483506 SETDB1Q15047 1291 aa17.07■□□□□ 0.32
HDAC6-225ENST00000483506 TSNAXIP1Q2TAA8 658 aa17.07■□□□□ 0.32
HDAC6-225ENST00000483506 PRAMEF9Q5VWM5 478 aa17.07■□□□□ 0.32
HDAC6-225ENST00000483506 METTL2BQ6P1Q9 378 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms