RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 MAPK12P53778 367 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 EVCP57679 992 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 CKAP4Q07065 602 aaKnown RBP5.21□□□□□ -1.58
USP40-213ENST00000483216 WHAMMP3Q1A5X7 153 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 VWC2Q2TAL6 325 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 LETM2Q2VYF4 491 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 XKR6Q5GH73 641 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 XKR3Q5GH77 459 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 MFSD4BQ5TF39 518 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 NUP54Q7Z3B4 507 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 CABS1Q96KC9 395 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 CRACR2AQ9BSW2 395 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 P2RY12Q9H244 342 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 ATP13A3Q9H7F0 1226 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 PLCXD1Q9NUJ7 323 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 ANKARQ7Z5J8 1434 aa5.21□□□□□ -1.58
USP40-213ENST00000483216 PEAK1Q9H792 1746 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 FMN2Q9NZ56 1722 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 SBNO1A3KN83 1393 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 MSH6P52701 1360 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 TMEM94Q12767 1356 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 VPS37CA5D8V6 355 aaPredicted RBP5.2□□□□□ -1.58
USP40-213ENST00000483216 GOLGA6L10A6NI86 522 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 GOLGA8KD6RF30 607 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 CCDC175P0C221 793 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 HSPA1LP34931 641 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 PTGER4P35408 488 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 NKX2-1P43699 371 aaPredicted RBP5.2□□□□□ -1.58
USP40-213ENST00000483216 ALDH3A2P51648 485 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 CSE1LP55060 971 aaKnown RBP5.2□□□□□ -1.58
USP40-213ENST00000483216 AIMP1Q12904 312 aaKnown RBP5.2□□□□□ -1.58
USP40-213ENST00000483216 ITGA7Q13683 1181 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 TOMM20Q15388 145 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 UGP2Q16851 508 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 CTU2Q2VPK5 515 aaKnown RBP5.2□□□□□ -1.58
USP40-213ENST00000483216 FILIP1LQ4L180 1135 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 BLOC1S2Q6QNY1 142 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 ZNF497Q6ZNH5 498 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 Q6ZSR9 355 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 RUFY3Q7L099 469 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 PLPPR4Q7Z2D5 763 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 CENPVQ7Z7K6 275 aaPredicted RBP5.2□□□□□ -1.58
USP40-213ENST00000483216 IQCHQ86VS3 1027 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 ARFGAP2Q8N6H7 521 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 NIPA2Q8N8Q9 360 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 GPATCH11Q8N954 259 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 OR5AP2Q8NGF4 316 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 AFAP1L1Q8TED9 768 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.2□□□□□ -1.58
USP40-213ENST00000483216 MOB3AQ96BX8 217 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 ZNF653Q96CK0 615 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 MAGED4Q96JG8 741 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 FAM20AQ96MK3 541 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 RUFY1Q96T51 708 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 HOMER3Q9NSC5 361 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 NKIRAS2Q9NYR9 191 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 KLHL8Q9P2G9 620 aaPredicted RBP5.2□□□□□ -1.58
USP40-213ENST00000483216 STUB1Q9UNE7 303 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 RPS6KL1Q9Y6S9 549 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 RGPD1P0DJD0 1748 aa5.2□□□□□ -1.58
USP40-213ENST00000483216 MAP3K5Q99683 1374 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 USP54Q70EL1 1684 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 IGKV3D-15A0A087WSY6 115 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 CTAGE15A4D2H0 777 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 SPRY1O43609 319 aaPredicted RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 GLRA3O75311 464 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 LUC7L3O95232 432 aaKnown RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 TOP1P11387 765 aaKnown RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 TYMPP19971 482 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 RPL21P46778 160 aaKnown RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 LHX1P48742 406 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 ASCL1P50553 236 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 LIMK1P53667 647 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 SLC8A3P57103 927 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 MAP2K1Q02750 393 aaPredicted RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 PRPF4BQ13523 1007 aaKnown RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 HERC3Q15034 1050 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 TMEM266Q2M3C6 531 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 ARMC4Q5T2S8 1044 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 FBXL22Q6P050 247 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 RBPMS2Q6ZRY4 209 aaKnown RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 CTAGE6Q86UF2 777 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 OTUD6BQ8N6M0 293 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 KCTD6Q8NC69 237 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 PGAP3Q96FM1 320 aaPredicted RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 THOC1Q96FV9 657 aaKnown RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 POM121L2Q96KW2 1035 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 LINC00615Q96LM1 132 aaPredicted RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 LINC00479Q96M42 142 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 JAKMIP1Q96N16 626 aaKnown RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 THUMPD2Q9BTF0 503 aaKnown RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 SHARPINQ9H0F6 387 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 FAM207AQ9NSI2 230 aaPredicted RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 HYPKQ9NX55 129 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 VPS18Q9P253 973 aa5.19□□□□□ -1.58
USP40-213ENST00000483216 RGPD8O14715 1765 aaPredicted RBP5.19□□□□□ -1.58
USP40-213ENST00000483216 PIK3C2AO00443 1686 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 FLT4P35916 1363 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 P4HA2O15460 535 aa5.18□□□□□ -1.58
USP40-213ENST00000483216 CDK2AP2O75956 126 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms