RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 IL17FQ96PD4 163 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 OSBPL9Q96SU4 736 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 NDC1Q9BTX1 674 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 SPRTNQ9H040 489 aaPredicted RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 ING2Q9H160 280 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 EPN3Q9H201 632 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 TXLNGQ9NUQ3 528 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 INTS10Q9NVR2 710 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 EURLQ9NYK6 297 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 SPATA7Q9P0W8 599 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 NDOR1Q9UHB4 597 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 CIDEBQ9UHD4 219 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 G3BP2Q9UN86 482 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 CRYL1Q9Y2S2 319 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 NFS1Q9Y697 457 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 MYO18BQ8IUG5 2567 aa6.52□□□□□ -1.37
CCDC88A-213ENST00000476903 CTAGE9A4FU28 777 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 ARGFXA6NJG6 315 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 TARM1B6A8C7 271 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 GOLGA8MH3BSY2 632 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 NIPSNAP2O75323 286 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 USP1O94782 785 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 MATN4O95460 622 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 CAPN1P07384 714 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 CBSLP0DN79 551 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 PKMP14618 531 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 NR1D1P20393 614 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 CBSP35520 551 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 FOLR3P41439 243 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 MC3RP41968 323 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 CCL11P51671 97 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 PGDP52209 483 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 ARSFP54793 590 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 RRADP55042 308 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 DCDP81605 110 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 CHAF1BQ13112 559 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 PPP1R7Q15435 360 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 LONRF1Q17RB8 773 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 TTLL9Q3SXZ7 439 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 ANKRD20A4Q4UJ75 823 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 TCTE1Q5JU00 501 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 FAM69BQ5VUD6 431 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 MLIPQ5VWP3 458 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 FIGLAQ6QHK4 219 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 CENPUQ71F23 418 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 MED25Q71SY5 747 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 REXO1L1PQ8IX06 675 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 LMNTD2Q8IXW0 634 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 PPIL6Q8IXY8 311 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 ZBTB2Q8N680 514 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 NAT8LQ8N9F0 302 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 LMNTD1Q8N9Z9 388 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 TEX19Q8NA77 164 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 GABPB2Q8TAK5 448 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 HMGCLL1Q8TB92 370 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 CALML6Q8TD86 181 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 ZUFSPQ96AP4 578 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 FAM136AQ96C01 138 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 IP6K3Q96PC2 410 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 GBP5Q96PP8 586 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 SLC25A23Q9BV35 468 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 SSBP3Q9BWW4 388 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 TRIM55Q9BYV6 548 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 CCDC68Q9H2F9 335 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 FAM114A2Q9NRY5 505 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 IL1RAPL1Q9NZN1 696 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 IFT80Q9P2H3 777 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 DHCR7Q9UBM7 475 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 SNX12Q9UMY4 172 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 RUVBL2Q9Y230 463 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 KLHL20Q9Y2M5 609 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 NEU2Q9Y3R4 380 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 PCDHGA9Q9Y5G4 932 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 MAD1L1Q9Y6D9 718 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 FAM169AQ9Y6X4 670 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 DOCK10Q96BY6 2186 aa6.51□□□□□ -1.37
CCDC88A-213ENST00000476903 NBASA2RRP1 2371 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ZCWPW2A0A1B0GU75 182 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 A0A1B0GX78 115 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ZNF839A8K0R7 811 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ARHGEF33A8MVX0 844 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 K7EM74 188 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 MYO1CO00159 1063 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ZNF185O15231 689 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 PSIP1O75475 530 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 KLF7O75840 302 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 CEACAM4O75871 244 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ATE1O95260 518 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 IGHEP01854 428 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 CATP04040 527 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 PIM1P11309 404 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 TCP1P17987 556 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 PSMB5P28074 263 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 CMPK1P30085 196 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 OTX2P32243 289 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 HSD17B2P37059 387 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 GRIA3P42263 894 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 SLC1A2P43004 574 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 MAGEA3P43357 314 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 PRR5P85299 388 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms