RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 TM9SF3Q9HD45 589 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 SPATS2LQ9NUQ6 558 aaKnown RBP3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 ABCF3Q9NUQ8 709 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 INTS9Q9NV88 658 aaKnown RBP3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 SMOXQ9NWM0 555 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 UTP6Q9NYH9 597 aaKnown RBP3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 OGFRQ9NZT2 677 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 SENP1Q9P0U3 644 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 CPSF2Q9P2I0 782 aaKnown RBP3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 NFKBIL1Q9UBC1 381 aaPredicted RBP3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 KLQ9UEF7 1012 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 SLC23A2Q9UGH3 650 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 CIDEBQ9UHD4 219 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 IKZF3Q9UKT9 509 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 GRID1Q9ULK0 1009 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 CORO1CQ9ULV4 474 aaPredicted RBP3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 SUFUQ9UMX1 484 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 DMTF1Q9Y222 760 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 KCNK6Q9Y257 313 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 MED16Q9Y2X0 877 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 TRPM6Q9BX84 2022 aa3.97□□□□□ -1.77
TMEM39A-204ENST00000468545 LRRK1Q38SD2 2015 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 A0A1B0GVT2 93 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 PABPN1LA6NDY0 278 aaKnown RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 MGAT4DA6NG13 374 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 PDZK1P1A8MUH7 402 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 SUPT3HB4E1H0 165 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 UBXN8O00124 270 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 TLR4O00206 839 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 QSOX1O00391 747 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 BTN3A1O00481 513 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 KPNA5O15131 536 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 BCAT2O15382 392 aaPredicted RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 SLC16A6O15403 523 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 TYROBPO43914 113 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 PLIN3O60664 434 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 SMIM24O75264 130 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 SUPT3HO75486 399 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 GSTA1P08263 222 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 HOXC4P09017 264 aaPredicted RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 RBP1P09455 135 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 HIST1H2AGP0C0S8 130 aaPredicted RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 RAP2AP10114 183 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 MYL2P10916 166 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 TDGF1P13385 188 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 GFAPP14136 432 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 CPA3P15088 417 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 VCLP18206 1134 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 TAC1P20366 129 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 HIST1H2ADP20671 130 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 IDSP22304 550 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 TEAD1P28347 426 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 NUDT1P36639 197 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 MAGEA12P43365 314 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 BDKRB1P46663 353 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 PPM1FP49593 454 aaPredicted RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 PRLHRP49683 370 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 CLCNKAP51800 687 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 KPNA2P52292 529 aaKnown RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 ADARP55265 1226 aaKnown RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 KIAA1024LP59773 190 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 CTXN1P60606 82 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 PFN3P60673 137 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 ATP6V0D1P61421 351 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 YPEL5P62699 121 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 IL9RQ01113 521 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 ILF2Q12905 390 aaKnown RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 EIF2B5Q13144 721 aaKnown RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 PRKG2Q13237 762 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 TSTA3Q13630 321 aaPredicted RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 KRT33BQ14525 404 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 OR4D1Q15615 310 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 TSNQ15631 228 aaKnown RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 ZKSCAN8Q15776 578 aaPredicted RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 CCDC6Q16204 474 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 ALG11Q2TAA5 492 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 C18orf21Q32NC0 220 aaPredicted RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 CCDC153Q494R4 210 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 SPATS1Q496A3 300 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 PLK5Q496M5 336 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 MINDY4Q4G0A6 757 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 BCL7AQ4VC05 210 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 PYCR3Q53H96 274 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 TNFAIP8L3Q5GJ75 292 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 PLEKHS1Q5SXH7 462 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 LYSMD4Q5XG99 296 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 LRRC8EQ6NSJ5 796 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 SLC30A9Q6PML9 568 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 CYHR1Q6ZMK1 362 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 FRA10AC1Q70Z53 315 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 TAF8Q7Z7C8 310 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 GPSM1Q86YR5 675 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 PLXDC1Q8IUK5 500 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 NUDCD3Q8IVD9 361 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 ZNF547Q8IVP9 402 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 CENPLQ8N0S6 344 aaPredicted RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 SLC22A18ASQ8N1D0 253 aa3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 FSTL5Q8N475 847 aaPredicted RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 C2orf73Q8N5S3 287 aaPredicted RBP3.96□□□□□ -1.78
TMEM39A-204ENST00000468545 DENND6BQ8NEG7 585 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms