RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 PCDHB14Q9Y5E9 798 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 PLOD3O60568 738 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 LAMP2P13473 410 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 GJA1P17302 382 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 FADDQ13158 208 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 CLCA4Q14CN2 919 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 NANOGNBQ7Z5D8 188 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 GAB3Q8WWW8 586 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 ITFG2Q969R8 447 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 OR51B5Q9H339 312 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 ACTL7AQ9Y615 435 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 VILLO15195 856 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 OR10H2O60403 315 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 GSTM3P21266 225 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 ANGPT1Q15389 498 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 TICAM1Q8IUC6 712 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 TTLQ8NG68 377 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 OR4K1Q8NGD4 311 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 SLC5A11Q8WWX8 675 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 TAS2R7Q9NYW3 318 aa16.1■□□□□ 0.17
TCOF1-206ENST00000445265 SPIN1Q9Y657 262 aaPredicted RBP16.1■□□□□ 0.17
TCOF1-206ENST00000445265 BCHEP06276 602 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 PRMT2P55345 433 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 DNASE1L3Q13609 305 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 TCEA2Q15560 299 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 CLLU1OSQ5K130 101 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.09■□□□□ 0.17
TCOF1-206ENST00000445265 REEP3Q6NUK4 255 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 BRINP2Q9C0B6 783 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 CD300AQ9UGN4 299 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 SMCHD1A6NHR9 2005 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 C2orf78A6NCI8 922 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 PCCBP05166 539 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 EIF2B5Q13144 721 aaKnown RBP16.09■□□□□ 0.17
TCOF1-206ENST00000445265 C17orf99Q6UX52 265 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 FAM46DQ8NEK8 389 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 RGMAQ96B86 450 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 FCRL4Q96PJ5 515 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 KCNN2Q9H2S1 579 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 ISPDA4D126 451 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 K7ERQ8 282 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 TPST2O60704 377 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 GSRP00390 522 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 DDX6P26196 483 aaKnown RBP eCLIP16.09■□□□□ 0.17
TCOF1-206ENST00000445265 CMPK1P30085 196 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 TIA1P31483 386 aaKnown RBP eCLIP16.09■□□□□ 0.172e-7■□□□□ 8.2
TCOF1-206ENST00000445265 RPL4P36578 427 aaKnown RBP16.09■□□□□ 0.17
TCOF1-206ENST00000445265 PREPP48147 710 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 ZNF311Q5JNZ3 666 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 LMAN2LQ9H0V9 348 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 DCAF13Q9NV06 445 aaKnown RBP16.09■□□□□ 0.17
TCOF1-206ENST00000445265 OLAHQ9NV23 265 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 PCDHA9Q9Y5H5 950 aa16.09■□□□□ 0.17
TCOF1-206ENST00000445265 POP7O75817 140 aaKnown RBP16.08■□□□□ 0.17
TCOF1-206ENST00000445265 CSTF2P33240 577 aaKnown RBP eCLIP16.08■□□□□ 0.17
TCOF1-206ENST00000445265 ZNF33BQ06732 778 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 NDUFA9Q16795 377 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 GTDC1Q4AE62 458 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 C11orf88Q6PI97 169 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 CBARPQ8N350 705 aaPredicted RBP16.08■□□□□ 0.17
TCOF1-206ENST00000445265 ABHD11Q8NFV4 315 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 SLC9A6Q92581 669 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 MND1Q9BWT6 205 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 DLGAP4Q9Y2H0 992 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 ARNTP27540 789 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 ST3GAL4Q11206 333 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 SLC9A5Q14940 896 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 DPY19L3Q6ZPD9 716 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 SPRED1Q7Z699 444 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 SAMD14Q8IZD0 417 aaPredicted RBP16.08■□□□□ 0.17
TCOF1-206ENST00000445265 SLC15A4Q8N697 577 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 OR9A1PQ8NGU1 263 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 ZNF675Q8TD23 568 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 SMG7Q92540 1137 aaKnown RBP16.08■□□□□ 0.17
TCOF1-206ENST00000445265 SCAMP4Q969E2 229 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 PDLIM5Q96HC4 596 aaKnown RBP16.08■□□□□ 0.17
TCOF1-206ENST00000445265 KCTD7Q96MP8 289 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 IL26Q9NPH9 171 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 MAP10Q9P2G4 905 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 ERVW-1Q9UQF0 538 aa16.08■□□□□ 0.17
TCOF1-206ENST00000445265 LEFTY2O00292 366 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 NDUFAF6Q330K2 333 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 ATP13A5Q4VNC0 1218 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 TMEM236Q5W0B7 351 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 ZSWIM9Q86XI8 627 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 RNF130Q86XS8 419 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 OMA1Q96E52 524 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 PTPN18Q99952 460 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 SLC12A9Q9BXP2 914 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 TAS2R9Q9NYW1 312 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 FBXW2Q9UKT8 454 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 ARFGEF1Q9Y6D6 1849 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 STK25O00506 426 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 CAPZA2P47755 286 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 DOC2AQ14183 400 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 RUNDC3AQ59EK9 446 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 IKBIPQ70UQ0 350 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 KRT74Q7RTS7 529 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 FUNDC1Q8IVP5 155 aa16.08■□□□□ 0.16
TCOF1-206ENST00000445265 FLCNQ8NFG4 579 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms