RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 HERC3Q15034 1050 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 HSF5Q4G112 596 aaPredicted RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 GPR180Q86V85 440 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 SMAD5Q99717 465 aaKnown RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 SMOC1Q9H4F8 434 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 ALG2Q9H553 416 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 C6orf106Q9H6K1 298 aaPredicted RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 AKTIPQ9H8T0 292 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 THAP10Q9P2Z0 257 aaPredicted RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 PADI2Q9Y2J8 665 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 TLR4O00206 839 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 EI24O14681 340 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 VEGFDO43915 354 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 HOXC13P31276 330 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 RACK1P63244 317 aaKnown RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 MS4A2Q01362 244 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 ZBED5Q49AG3 693 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 ARMC4Q5T2S8 1044 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 GLYATQ6IB77 296 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 SLC7A5P1Q8MH63 180 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 ACVR1CQ8NER5 493 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 STARD8Q92502 1023 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 ISOC1Q96CN7 298 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 C5orf34Q96MH7 638 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 PRDM8Q9NQV8 689 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 INTS10Q9NVR2 710 aaKnown RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 C19orf25Q9UFG5 118 aaPredicted RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 TRIP12Q14669 1992 aaPredicted RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 ZCWPW2A0A1B0GU75 182 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 BBIP1A8MTZ0 92 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 G3V2L1 256 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 SDHDO14521 159 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 SLC22A2O15244 555 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 UBXN7O94888 489 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 EPN2O95208 641 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 NUDT1P36639 197 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 CASP6P55212 293 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 RHDQ02161 417 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 NDUFA5Q16718 116 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 FAM91A1Q658Y4 838 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 OR9Q1Q8NGQ5 310 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 UTP15Q8TED0 518 aaKnown RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 ZNF689Q96CS4 500 aaPredicted RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 TSGA13Q96PP4 275 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 OAZ3Q9UMX2 235 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 CENPFP49454 3210 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 LOC100506127A0A0U1RQW1 187 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 C4orf47A7E2U8 309 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 CCNKO75909 580 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 HIST1H2ABP04908 130 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 DBTP11182 482 aaKnown RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 EFNA1P20827 205 aaPredicted RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 SLC5A2P31639 672 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 LAPTM5Q13571 262 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 DNASE1L3Q13609 305 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 ZNF77Q15935 545 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 SULT1C3Q6IMI6 304 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 HIST3H2AQ7L7L0 130 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 AMIGO1Q86WK6 493 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 ARL14Q8N4G2 192 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 SNIP1Q8TAD8 396 aaKnown RBP10.3□□□□□ -0.76
TCOF1-204ENST00000427724 HIST1H2ACQ93077 130 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 PTCHD1Q96NR3 888 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 KIFC1Q9BW19 673 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 MARCH7Q9H992 704 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 SLC39A1Q9NY26 324 aa10.3□□□□□ -0.76
TCOF1-204ENST00000427724 SBF2Q86WG5 1849 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 FUOMA2VDF0 154 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 TRIM64CA6NLI5 447 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 PRRT4C9JH25 899 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 CDC7O00311 574 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 PLGP00747 810 aaPredicted RBP10.29□□□□□ -0.76
TCOF1-204ENST00000427724 CST1P01037 141 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 ALOX5P09917 674 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 GSTT2P0CG29 244 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 GSTT2BP0CG30 244 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 NDUFV2P19404 249 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 RPS9P46781 194 aaKnown RBP10.29□□□□□ -0.76
TCOF1-204ENST00000427724 CLCN2P51788 898 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 MEF2AQ02078 507 aaPredicted RBP10.29□□□□□ -0.76
TCOF1-204ENST00000427724 AGTRAPQ6RW13 159 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 UGT2A3Q6UWM9 527 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 LIPIQ6XZB0 460 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 R3HCC1LQ7Z5L2 792 aaKnown RBP10.29□□□□□ -0.76
TCOF1-204ENST00000427724 CYP4Z1Q86W10 505 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 TBC1D21Q8IYX1 336 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 SYNPOQ8N3V7 929 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 CENPNQ96H22 339 aaPredicted RBP10.29□□□□□ -0.76
TCOF1-204ENST00000427724 PANX1Q96RD7 426 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 RETREG1Q9H6L5 497 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 SLAMF7Q9NQ25 335 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 SMPD3Q9NY59 655 aaPredicted RBP10.29□□□□□ -0.76
TCOF1-204ENST00000427724 MAT2BQ9NZL9 334 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 HMX2A2RU54 273 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 GRXCR2A6NFK2 248 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 NPIPB15A6NHN6 443 aaPredicted RBP10.29□□□□□ -0.76
TCOF1-204ENST00000427724 IL12BP29460 328 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 RPL3P39023 403 aaKnown RBP10.29□□□□□ -0.76
TCOF1-204ENST00000427724 GDF5P43026 501 aa10.29□□□□□ -0.76
TCOF1-204ENST00000427724 MAGEA6P43360 314 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms