RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 NCDNQ9UBB6 729 aa4.43□□□□□ -1.7
SF3B1-202ENST00000409915 CNOT8Q9UFF9 292 aaKnown RBP4.43□□□□□ -1.7
SF3B1-202ENST00000409915 MTRF1LQ9UGC7 380 aaKnown RBP4.43□□□□□ -1.7
SF3B1-202ENST00000409915 AMACRQ9UHK6 382 aa4.43□□□□□ -1.7
SF3B1-202ENST00000409915 STOML2Q9UJZ1 356 aa4.43□□□□□ -1.7
SF3B1-202ENST00000409915 VANGL2Q9ULK5 521 aa4.43□□□□□ -1.7
SF3B1-202ENST00000409915 NENFQ9UMX5 172 aa4.43□□□□□ -1.7
SF3B1-202ENST00000409915 DRG1Q9Y295 367 aaKnown RBP4.43□□□□□ -1.7
SF3B1-202ENST00000409915 B3GNT3Q9Y2A9 372 aa4.43□□□□□ -1.7
SF3B1-202ENST00000409915 ENTPD2Q9Y5L3 495 aa4.43□□□□□ -1.7
SF3B1-202ENST00000409915 KIAA1549LQ6ZVL6 1849 aa4.43□□□□□ -1.7
SF3B1-202ENST00000409915 CACNA1HO95180 2353 aa4.43□□□□□ -1.7
SF3B1-202ENST00000409915 ATG2BQ96BY7 2078 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 WDR87Q6ZQQ6 2873 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 TEX13CA0A0J9YWL9 993 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 A0A1W2PQ67 120 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 A0A1W2PQM1 296 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 TYW5A2RUC4 315 aaKnown RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF785A8K8V0 405 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 A8MUI8 341 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 KCNU1A8MYU2 1149 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 MIF4GDA9UHW6 222 aaKnown RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 WASH3PC4AMC7 463 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 TEX22C9J3V5 150 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 F5H5T6 163 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 FAM72CH0Y354 149 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 TRIM77I1YAP6 450 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF701M0R085 212 aaPredicted RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 CD3EAPO15446 510 aaKnown RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 LAMTOR5O43504 91 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 JRKO75564 520 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 CNTN5O94779 1100 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 SUN1O94901 812 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 HEXIM1O94992 359 aaKnown RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 LATS1O95835 1130 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 ONECUT2O95948 504 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 CYBBP04839 570 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 MMP2P08253 660 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 CISD3P0C7P0 127 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 TDGF1P13385 188 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 HLA-EP13747 358 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 AGAP20933 346 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 DRD1P21728 446 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 PSMA2P25787 234 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 HLA-FP30511 346 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 PRKAR1BP31321 381 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 HNRNPH3P31942 346 aaKnown RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 CD70P32970 193 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 THBS2P35442 1172 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 SOX6P35712 828 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 GJC1P36383 396 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 SLC1A1P43005 524 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 PTPN9P43378 593 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 KIR2DL1P43626 348 aaPredicted RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 RPL5P46777 297 aaKnown RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 RPS9P46781 194 aaKnown RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 HAAOP46952 286 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 PITPNBP48739 271 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 CXCR3P49682 368 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 GALCP54803 685 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 S100A12P80511 92 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 CSTF1Q05048 431 aaKnown RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 SLC34A1Q06495 639 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 ELP6Q0PNE2 266 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 SRSF5Q13243 272 aaKnown RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 CDH18Q13634 790 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 DMC1Q14565 340 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 RPS6KA1Q15418 735 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 CYTH1Q15438 398 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 ASTE1Q2TB18 679 aaPredicted RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF750Q32MQ0 723 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 TBRG1Q3YBR2 411 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 MPPE1Q53F39 396 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 TNFAIP8L3Q5GJ75 292 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 FSCBQ5H9T9 825 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 CEP78Q5JTW2 689 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 C6orf183Q5T699 404 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 RNASEH2BQ5TBB1 312 aaKnown RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 FAM72AQ5TYM5 149 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 TMEM215Q68D42 235 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 KIAA0930Q6ICG6 404 aaPredicted RBP4.42□□□□□ -1.7
SF3B1-202ENST00000409915 PLEKHA7Q6IQ23 1121 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 FAM72DQ6L9T8 149 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 CDPF1Q6NVV7 123 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 FBXL22Q6P050 247 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 SCYL2Q6P3W7 929 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 FAM122CQ6P4D5 195 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 RANBP10Q6VN20 620 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 ZYG11AQ6WRX3 759 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF600Q6ZNG1 722 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 DCDC5Q6ZRR9 648 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 PTCHD4Q6ZW05 846 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 BNIPLQ7Z465 357 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 SPATA19Q7Z5L4 167 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 TFAP2DQ7Z6R9 452 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 FAM72BQ86X60 149 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 PROSER1Q86XN7 944 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 WFDC3Q8IUB2 231 aa4.42□□□□□ -1.7
SF3B1-202ENST00000409915 TICAM1Q8IUC6 712 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms