RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 REEP4Q9H6H4 257 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 MPZL2O60487 215 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 IMPDH2P12268 514 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 IDSP22304 550 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 RAB15P59190 212 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 NFATC3Q12968 1075 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 KLHL35Q6PF15 583 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 CEACAM20Q6UY09 585 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 RNF130Q86XS8 419 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 FAR1Q8WVX9 515 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 C12orf66Q96MD2 445 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 MTG2Q9H4K7 406 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 ATP6V1HQ9UI12 483 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 FBXW2Q9UKT8 454 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 NCKAP1Q9Y2A7 1128 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 CACNB4O00305 520 aaPredicted RBP17.91■□□□□ 0.46
USP48-204ENST00000400301 ZW10O43264 779 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 DDX6P26196 483 aaKnown RBP eCLIP17.91■□□□□ 0.464e-6■■□□□ 13.7
USP48-204ENST00000400301 TIA1P31483 386 aaKnown RBP eCLIP17.91■□□□□ 0.463e-8■■■■□ 24.9
USP48-204ENST00000400301 ITGA1P56199 1179 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 SMU1Q2TAY7 513 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 CLIP4Q8N3C7 705 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 KLHL23Q8NBE8 558 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 UBASH3BQ8TF42 649 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 ZNF296Q8WUU4 475 aaPredicted RBP17.91■□□□□ 0.46
USP48-204ENST00000400301 ABHD8Q96I13 439 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 POLR2J3Q9H1A7 115 aaKnown RBP17.91■□□□□ 0.46
USP48-204ENST00000400301 RDH14Q9HBH5 336 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 PLAGL1Q9UM63 463 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 ZNFX1Q9P2E3 1918 aaKnown RBP17.91■□□□□ 0.46
USP48-204ENST00000400301 H3BMQ9 156 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 SRPRAP08240 638 aaKnown RBP17.91■□□□□ 0.46
USP48-204ENST00000400301 ZNF10P21506 573 aaPredicted RBP17.91■□□□□ 0.46
USP48-204ENST00000400301 RPP38P78345 283 aaKnown RBP17.91■□□□□ 0.46
USP48-204ENST00000400301 IQCCQ4KMZ1 466 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 CAMKK1Q8N5S9 505 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 COG8Q96MW5 612 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 SARDHQ9UL12 918 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 TMEM98Q9Y2Y6 226 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 INSL6Q9Y581 213 aa17.91■□□□□ 0.46
USP48-204ENST00000400301 TRBV23OR9-2A0A075B6M9 112 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 EIF3FO00303 357 aaPredicted RBP17.9■□□□□ 0.46
USP48-204ENST00000400301 RFPL2O75678 378 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 MT-ND2P03891 347 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 BCHEP06276 602 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 CHRM5P08912 532 aaPredicted RBP17.9■□□□□ 0.46
USP48-204ENST00000400301 TARDBPQ13148 414 aaKnown RBP eCLIP17.9■□□□□ 0.461e-8■■■■■ 32.1
USP48-204ENST00000400301 ADAMTS15Q8TE58 950 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 FUNDC2Q9BWH2 189 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 LHPPQ9H008 270 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 TVP23BQ9NYZ1 205 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 RPS6KB2Q9UBS0 482 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 ADAM30Q9UKF2 790 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 SLC16A8O95907 504 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 MBTPS1Q14703 1052 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 FAM124AQ86V42 546 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 SLC39A11Q8N1S5 342 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 HUS1BQ8NHY5 278 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 RASSF5Q8WWW0 418 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 SLC35G5Q96KT7 338 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 CWH43Q9H720 699 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 PDFQ9HBH1 243 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 DCAF13Q9NV06 445 aaKnown RBP17.9■□□□□ 0.46
USP48-204ENST00000400301 E7EQ34 232 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 RHOP08100 348 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 ZXDBP98169 803 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 TRMT2BQ96GJ1 504 aaKnown RBP17.9■□□□□ 0.46
USP48-204ENST00000400301 ZNF419Q96HQ0 510 aaPredicted RBP17.9■□□□□ 0.46
USP48-204ENST00000400301 HERC2P3Q9BVR0 1158 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 ITPAQ9BY32 194 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 HDHD2Q9H0R4 259 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 GORASP2Q9H8Y8 452 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 ZNF334Q9HCZ1 680 aaPredicted RBP17.9■□□□□ 0.46
USP48-204ENST00000400301 RHCGQ9UBD6 479 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 PCDHGA8Q9Y5G5 932 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 GON4LQ3T8J9 2241 aa17.9■□□□□ 0.46
USP48-204ENST00000400301 SAGE2PA6NJ88 616 aa17.89■□□□□ 0.46
USP48-204ENST00000400301 PSMD11O00231 422 aa17.89■□□□□ 0.46
USP48-204ENST00000400301 CLCNKAP51800 687 aa17.89■□□□□ 0.46
USP48-204ENST00000400301 ZNF630Q2M218 657 aaPredicted RBP17.89■□□□□ 0.46
USP48-204ENST00000400301 CDC73Q6P1J9 531 aa17.89■□□□□ 0.46
USP48-204ENST00000400301 ZNF730Q6ZMV8 503 aa17.89■□□□□ 0.46
USP48-204ENST00000400301 OR14C36Q8NHC7 312 aa17.89■□□□□ 0.46
USP48-204ENST00000400301 FNDC8Q8TC99 324 aa17.89■□□□□ 0.46
USP48-204ENST00000400301 NUDT8Q8WV74 236 aa17.89■□□□□ 0.46
USP48-204ENST00000400301 LINC01599Q8WXQ3 324 aa17.89■□□□□ 0.46
USP48-204ENST00000400301 ZNF583Q96ND8 569 aa17.89■□□□□ 0.46
USP48-204ENST00000400301 SLC27A6Q9Y2P4 619 aa17.89■□□□□ 0.46
USP48-204ENST00000400301 H7C0S8 307 aa17.89■□□□□ 0.45
USP48-204ENST00000400301 IGLV3-27P01718 113 aa17.89■□□□□ 0.45
USP48-204ENST00000400301 ACP5P13686 325 aa17.89■□□□□ 0.45
USP48-204ENST00000400301 GSTM2P28161 218 aa17.89■□□□□ 0.45
USP48-204ENST00000400301 CCR8P51685 355 aa17.89■□□□□ 0.45
USP48-204ENST00000400301 RGS1Q08116 209 aa17.89■□□□□ 0.45
USP48-204ENST00000400301 RAPSNQ13702 412 aa17.89■□□□□ 0.45
USP48-204ENST00000400301 COLEC12Q5KU26 742 aa17.89■□□□□ 0.45
USP48-204ENST00000400301 NUDT13Q86X67 352 aa17.89■□□□□ 0.45
USP48-204ENST00000400301 PCBD2Q9H0N5 130 aa17.89■□□□□ 0.45
USP48-204ENST00000400301 KLHL1Q9NR64 748 aa17.89■□□□□ 0.45
USP48-204ENST00000400301 DNAAF2Q9NVR5 837 aaKnown RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms