RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TRPC7Q9HCX4 862 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 MRPL17Q9NRX2 175 aaKnown RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 AGPAT3Q9NRZ7 376 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 FAM120CQ9NX05 1096 aaKnown RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 OR14J1Q9UGF5 321 aa3.9□□□□□ -1.79
HMGB1-204ENST00000399489 MRPS33Q9Y291 106 aaKnown RBP3.9□□□□□ -1.79
HMGB1-204ENST00000399489 PLEKHG2Q9H7P9 1386 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 TMEM202A6NGA9 273 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 ASB14A6NK59 587 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 VWC2LB2RUY7 222 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF879B4DU55 563 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 TOP3BO95985 862 aaKnown RBP3.89□□□□□ -1.79
HMGB1-204ENST00000399489 KRT14P02533 472 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 IGKV2-30P06310 120 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 OR2T7P0C7T2 308 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 PABPC4LP0CB38 370 aaKnown RBP3.89□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF3P17036 446 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 S1PR1P21453 382 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 PAICSP22234 425 aaKnown RBP3.89□□□□□ -1.79
HMGB1-204ENST00000399489 HTR2AP28223 471 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 HLA-FP30511 346 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 NF2P35240 595 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 OR3A1P47881 315 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 CDX1P47902 265 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-204ENST00000399489 ENTPD1P49961 510 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 DNAJC3Q13217 504 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 MVPQ14764 893 aaKnown RBP3.89□□□□□ -1.79
HMGB1-204ENST00000399489 LACTB2Q53H82 288 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-204ENST00000399489 NSUN5P2Q63ZY6 315 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 C18orf63Q68DL7 685 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 CES5AQ6NT32 575 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 SIGLEC15Q6ZMC9 328 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF782Q6ZMW2 699 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-204ENST00000399489 Q6ZWC4 215 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 MEX3DQ86XN8 651 aaKnown RBP3.89□□□□□ -1.79
HMGB1-204ENST00000399489 STHQ8IWL8 128 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 PARP16Q8N5Y8 322 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 C9orf106Q8NAJ2 232 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 OR2AJ1Q8NGZ0 328 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 HM13Q8TCT9 377 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 PIGBQ92521 554 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 OSTF1Q92882 214 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 NCLNQ969V3 563 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 ULK4Q96C45 1275 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 ANKRD27Q96NW4 1050 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 CATSPER2Q96P56 530 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 UQCC2Q9BRT2 126 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 C16orf70Q9BSU1 422 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 NSRP1Q9H0G5 558 aaKnown RBP3.89□□□□□ -1.79
HMGB1-204ENST00000399489 C8orf33Q9H7E9 229 aaPredicted RBP3.89□□□□□ -1.79
HMGB1-204ENST00000399489 CALHM2Q9HA72 323 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 GTSE1Q9NYZ3 720 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 NDRG3Q9UGV2 375 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 CRLS1Q9UJA2 301 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 CHMP2BQ9UQN3 213 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF510Q9Y2H8 683 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 GMEB1Q9Y692 573 aa3.89□□□□□ -1.79
HMGB1-204ENST00000399489 ABCC4O15439 1325 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 KIF7Q2M1P5 1343 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 A0A1W2PPK0 400 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 TMEM89A2RUT3 159 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 MBLAC1A4D2B0 266 aaPredicted RBP3.88□□□□□ -1.79
HMGB1-204ENST00000399489 OR6C74A6NCV1 312 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 SERINC4A6NH21 518 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 A8MUI8 341 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 BECN2A8MW95 431 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 SLC22A2O15244 555 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF208O43345 1280 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 XRCC3O43542 346 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 OR10H2O60403 315 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 FHP07954 510 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 OR8G3PP0DMU2 310 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 APEHP13798 732 aaKnown RBP3.88□□□□□ -1.79
HMGB1-204ENST00000399489 CPA3P15088 417 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 FPR3P25089 353 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 CDC25AP30304 524 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 NSFP46459 744 aaKnown RBP3.88□□□□□ -1.79
HMGB1-204ENST00000399489 RGS4P49798 205 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 SNRPEP62304 92 aaKnown RBP3.88□□□□□ -1.79
HMGB1-204ENST00000399489 RPL23AP62750 156 aaKnown RBP3.88□□□□□ -1.79
HMGB1-204ENST00000399489 IRX1P78414 480 aaPredicted RBP3.88□□□□□ -1.79
HMGB1-204ENST00000399489 DSC1Q08554 894 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 MSLNQ13421 630 aaPredicted RBP3.88□□□□□ -1.79
HMGB1-204ENST00000399489 LAMB3Q13751 1172 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 CARTPTQ16568 116 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 ACKR1Q16570 336 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 MEP1AQ16819 746 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 FSCBQ5H9T9 825 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 RABGAP1LQ5R372 815 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 C10orf120Q5SQS8 335 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 PRAMEF19Q5SWL8 479 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 AGAP6Q5VW22 663 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 CAPRIN2Q6IMN6 1127 aaKnown RBP3.88□□□□□ -1.79
HMGB1-204ENST00000399489 FAM159AQ6UWV7 190 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 CDR2LQ86X02 465 aaPredicted RBP3.88□□□□□ -1.79
HMGB1-204ENST00000399489 ARFGAP2Q8N6H7 521 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 BPIFCQ8NFQ6 507 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 LIPHQ8WWY8 451 aa3.88□□□□□ -1.79
HMGB1-204ENST00000399489 RNF183Q96D59 192 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms