RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 TMEM45AQ9NWC5 275 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 MED16Q9Y2X0 877 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PLEKHG1Q9ULL1 1385 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ILVBLA1L0T0 632 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM221A6NGB7 291 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 M0R296 226 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 RFXAPO00287 272 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 RNF224P0DH78 156 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CSNK2A2P19784 350 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 RPL22P35268 128 aaKnown RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CTSKP43235 329 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 HSD11B2P80365 405 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PRR5P85299 388 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 LAPTM5Q13571 262 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 OR8B8Q15620 311 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PLEKHN1Q494U1 663 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SFRP5Q5T4F7 317 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SCIMPQ6UWF3 145 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CLEC4GQ6UXB4 293 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PLEKHH3Q7Z736 793 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 MON1AQ86VX9 555 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 GPC2Q8N158 579 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 OR2T12Q8NG77 320 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 OR5A2Q8NGI9 324 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 GTF3C2Q8WUA4 911 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM203Q969S6 136 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PRMT6Q96LA8 375 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PIP5K1AQ99755 562 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SPAG8Q99932 426 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 GPATCH1Q9BRR8 931 aaKnown RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CRISPLD2Q9H0B8 497 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 AKIRIN1Q9H9L7 192 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 HSFX1Q9UBD0 423 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 NME7Q9Y5B8 376 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PCDHB2Q9Y5E7 798 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 URB2Q14146 1524 aaKnown RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 BLOC1S5-TXNDC5H3BN57 136 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 EML1O00423 815 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SOX1O00570 391 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SEC14L2O76054 403 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 FHP07954 510 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 OR5H8P0DN80 308 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SPP1P10451 314 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CTRB1P17538 263 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 EDNRAP25101 427 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ADORA2AP29274 412 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 RBP2P50120 134 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 OR2B6P58173 313 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF92Q03936 586 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 NKPD1Q17RQ9 610 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CTRB2Q6GPI1 263 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 OVCH1Q7RTY7 1134 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 IGFN1Q86VF2 1251 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 RIOX2Q8IUF8 465 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 REXO1L1PQ8IX06 675 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 OR1S1Q8NH92 325 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 POMKQ9H5K3 350 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 HRASLSQ9HDD0 168 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 GPR160Q9UJ42 338 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SERTAD3Q9UJW9 196 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 FANCAO15360 1455 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 LOC102724428A0A0B4J2F2 783 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 HELTA6NFD8 242 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 LACTBL1A8MY62 500 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PRMT5O14744 637 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ATG12O94817 140 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 NSA2O95478 260 aaKnown RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SCGB1D1O95968 90 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 HOXC8P31273 242 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 TNFSF8P32971 234 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ATP5C1P36542 298 aaKnown RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 TKTL1P51854 596 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 NUBP1P53384 320 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SIK1P57059 783 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 LIPEQ05469 1076 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 PDE7AQ13946 482 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 BAATQ14032 418 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 NFE2Q16621 373 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 FLYWCH1Q4VC44 716 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 FAM131BQ86XD5 332 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 OR4N5Q8IXE1 308 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 GTPBP8Q8N3Z3 284 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 RSRP1Q9BUV0 290 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ALX4Q9H161 411 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 AGPAT5Q9NUQ2 364 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CHRNA9Q9UGM1 479 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF510Q9Y2H8 683 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM184BQ9Y519 407 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 POLR1AO95602 1720 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF335Q9H4Z2 1342 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 NPHP4O75161 1426 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 RFXANKO14593 260 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 TACSTD2P09758 323 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 SERPINF1P36955 418 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 TNFSF9P41273 254 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 MC2RQ01718 297 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CREMQ03060 361 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF460Q14592 562 aa4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CPSF6Q16630 551 aaKnown RBP eCLIP4.52□□□□□ -1.69
SCN1A-202ENST00000375405 CNKSR3Q6P9H4 555 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms