RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 PCDH7O60245 1069 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 AOC2O75106 756 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 CBSLP0DN79 551 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 CBSP35520 551 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 CDH12P55289 794 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 SPIBQ01892 262 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 DOC2BQ14184 412 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 GPR33Q49SQ1 333 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 ATP13A5Q4VNC0 1218 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 ADNP2Q6IQ32 1131 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 ZNF605Q86T29 641 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 TCAIMQ8N3R3 496 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 C2orf69Q8N8R5 385 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 IL17RDQ8NFM7 739 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 OR8J2Q8NGG1 315 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 SDHCQ99643 169 aaPredicted RBP15.8■□□□□ 0.12
SDC4-201ENST00000372733 CCM2Q9BSQ5 444 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 DUSP26Q9BV47 211 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 SLC12A9Q9BXP2 914 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 NUAK2Q9H093 628 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 PADI2Q9Y2J8 665 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 PEX16Q9Y5Y5 336 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 MN1Q10571 1320 aaPredicted RBP15.8■□□□□ 0.12
SDC4-201ENST00000372733 KIAA0513O60268 411 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 PTPN2P17706 415 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 LIMK1P53667 647 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 CDH18Q13634 790 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 CYP27C1Q4G0S4 372 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 SPANXN2Q5MJ10 180 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 MLIPQ5VWP3 458 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 MMAAQ8IVH4 418 aaKnown RBP15.8■□□□□ 0.12
SDC4-201ENST00000372733 LGI4Q8N135 537 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 OR9Q2Q8NGE9 314 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 OR5M11Q96RB7 305 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 YME1L1Q96TA2 773 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 KCNS3Q9BQ31 491 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 DOHHQ9BU89 302 aa15.8■□□□□ 0.12
SDC4-201ENST00000372733 MOV10Q9HCE1 1003 aaKnown RBP15.8■□□□□ 0.12
SDC4-201ENST00000372733 ZNF106Q9H2Y7 1883 aaKnown RBP15.79■□□□□ 0.12
SDC4-201ENST00000372733 NPIPB8E9PQR5 432 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 CTDSP2O14595 271 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 DPM1O60762 260 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 ABCB1P08183 1280 aaPredicted RBP15.79■□□□□ 0.12
SDC4-201ENST00000372733 HIST1H2AGP0C0S8 130 aaPredicted RBP15.79■□□□□ 0.12
SDC4-201ENST00000372733 HLA-EP13747 358 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 GABRB1P18505 474 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 HIST1H2ADP20671 130 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 PLD1Q13393 1074 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 EXOC3L2Q2M3D2 409 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 FBXO43Q4G163 708 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 ANGPTL8Q6UXH0 198 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 RAVER1Q8IY67 606 aaKnown RBP15.79■□□□□ 0.12
SDC4-201ENST00000372733 NAGSQ8N159 534 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 BCL7CQ8WUZ0 217 aaPredicted RBP15.79■□□□□ 0.12
SDC4-201ENST00000372733 ALG14Q96F25 216 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 HIST1H2AHQ96KK5 128 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 COPS8Q99627 209 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 HIST1H2AJQ99878 128 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 H2AFJQ9BTM1 129 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 IMPAD1Q9NX62 359 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 ERVK13-1Q9NX77 482 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 ZDHHC3Q9NYG2 299 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 DUSP12Q9UNI6 340 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 CFAP20Q9Y6A4 193 aaKnown RBP15.79■□□□□ 0.12
SDC4-201ENST00000372733 C1orf226A1L170 272 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 POU2F1P14859 743 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 JUPP14923 745 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 HMGA1P17096 107 aaKnown RBP15.79■□□□□ 0.12
SDC4-201ENST00000372733 PCGF2P35227 344 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 DEFA1P59665 94 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 DEFA3P59666 94 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 IRF8Q02556 426 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 RGNQ15493 299 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 TSTQ16762 297 aaKnown RBP15.79■□□□□ 0.12
SDC4-201ENST00000372733 CDKL4Q5MAI5 379 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 AGAP6Q5VW22 663 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 TRAF7Q6Q0C0 670 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 B3GNT7Q8NFL0 401 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 ASB11Q8WXH4 323 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 AGAP4Q96P64 663 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 RAD9AQ99638 391 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 KLF16Q9BXK1 252 aaPredicted RBP15.79■□□□□ 0.12
SDC4-201ENST00000372733 PRM3Q9NNZ6 103 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 MS4A12Q9NXJ0 267 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 FAM8A1Q9UBU6 413 aa15.79■□□□□ 0.12
SDC4-201ENST00000372733 HTTP42858 3142 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 SCAMP2O15127 329 aaKnown RBP15.78■□□□□ 0.12
SDC4-201ENST00000372733 ADAMDEC1O15204 470 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 SEPT4O43236 478 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 CA12O43570 354 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 PRMT3O60678 531 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 PXNP49023 591 aaPredicted RBP15.78■□□□□ 0.12
SDC4-201ENST00000372733 ACSM2AQ08AH3 577 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 CSTF3Q12996 717 aaKnown RBP15.78■□□□□ 0.12
SDC4-201ENST00000372733 NDUFA5Q16718 116 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 HKDC1Q2TB90 917 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 ACSM2BQ68CK6 577 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 SERPINA13PQ6UXR4 307 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 ZNF783Q6ZMS7 281 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 DCAF4L2Q8NA75 395 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms