RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FARSBQ9NSD9 589 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 TRNAU1APQ9NX07 287 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 MYOTQ9UBF9 498 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 IL20RAQ9UHF4 553 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 NID2Q14112 1375 aa3.96□□□□□ -1.77
USH2A-202ENST00000366942 D6RAR5 112 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PTGES3LE9PB15 166 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PJA2O43164 708 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PAGE1O75459 146 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PRAMEF12O95522 483 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 FUCA1P04066 466 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ITGA2BP08514 1039 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 FTH1P19P0C7X4 201 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 IL9P15248 144 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 FKBP2P26885 142 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 RPL22P35268 128 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 GUCY2FP51841 1108 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 TPTEP56180 551 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ERVFC1P60507 584 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 HSD11B2P80365 405 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 S100A12P80511 92 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CHRNEQ04844 493 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CAPSQ13938 189 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 SLC25A25Q6KCM7 469 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 NCEH1Q6PIU2 408 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 LIPIQ6XZB0 460 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 MED25Q71SY5 747 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 TMPRSS11BQ86T26 416 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 SIAH1Q8IUQ4 282 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 TBC1D21Q8IYX1 336 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PROKR1Q8TCW9 393 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ACTRT2Q8TDY3 377 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 TATDN2Q93075 761 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 MICU1Q9BPX6 476 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 GPR87Q9BY21 358 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CD244Q9BZW8 370 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 NMUR1Q9HB89 426 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ERVK-18Q9QC07 812 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 OR5V1Q9UGF6 321 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 POMT2Q9UKY4 750 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 NUAK1O60285 661 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 UGT1A9O60656 530 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 WDR47O94967 919 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PIGRP01833 764 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 C8orf89P0DMQ9 161 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PEPDP12955 493 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 GSTM2P28161 218 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 MAGEA3P43357 314 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 SERPINB10P48595 397 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 KIR2DS3Q14952 304 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 RASA2Q15283 850 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 RAB11BQ15907 218 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 NFIL3Q16649 462 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 GXYLT1Q4G148 440 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PRAMEF14Q5SWL7 426 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PRAMEF13Q5VWM6 474 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 FAM151BQ6UXP7 276 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 WDR5BQ86VZ2 330 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CYB5D2Q8WUJ1 264 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 HTR3CQ8WXA8 447 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 KAT2BQ92831 832 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 NELL1Q92832 810 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 LENG1Q96BZ8 264 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 LGALS12Q96DT0 336 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CMTM7Q96FZ5 175 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 TBATAQ96M53 351 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 UGT1A7Q9HAW7 530 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 UGT1A10Q9HAW8 530 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 UGT1A8Q9HAW9 530 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 EIF2B3Q9NR50 452 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 CSNK1G3Q9Y6M4 447 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 SHROOM2Q13796 1616 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 SPTBN2O15020 2390 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 SPAARA0A1B0GVQ0 90 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 GALR3O60755 368 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 MRPL33O75394 65 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 EGFP01133 1207 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 APOA1P02647 267 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CD3GP09693 182 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 TNFRSF1AP19438 455 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 FMO4P31512 558 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 VSX2P58304 361 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 LILRA4P59901 499 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 SLC35B1P78383 322 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 DEFB103AP81534 67 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 NFATC4Q14934 902 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 TAZQ16635 292 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 HNRNPA1L2Q32P51 320 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 ZNF658BQ4V348 819 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 DENND5AQ6IQ26 1287 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 NXPE4Q6UWF7 544 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 HDXQ7Z353 690 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ZNF550Q7Z398 422 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 ELMOD2Q8IZ81 293 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 CENPLQ8N0S6 344 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 KDM1BQ8NB78 822 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 PGAP3Q96FM1 320 aaPredicted RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 SNX27Q96L92 541 aa3.96□□□□□ -1.78
USH2A-202ENST00000366942 TRNT1Q96Q11 434 aaKnown RBP3.96□□□□□ -1.78
USH2A-202ENST00000366942 CHP1Q99653 195 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms