RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CSGALNACT1Q8TDX6 532 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 CAPSLQ8WWF8 208 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 ASB11Q8WXH4 323 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 SLC38A4Q969I6 547 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 TESCQ96BS2 214 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 VMP1Q96GC9 406 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 CEP295NLQ96MC4 621 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 SLC12A9Q9BXP2 914 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 SUV39H2Q9H5I1 410 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 SIAEQ9HAT2 523 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 RDH14Q9HBH5 336 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 C14orf119Q9NWQ9 140 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 CKAP5Q14008 2032 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 GFRA2O00451 464 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 SH3BP5O60239 455 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 ATP1B2P14415 290 aaPredicted RBP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 CTSKP43235 329 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 TRPC1P48995 793 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 STARD3Q14849 445 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 LYPLAL1Q5VWZ2 237 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 STEAP3Q658P3 488 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 SLC8B1Q6J4K2 584 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 LRRC70Q7Z2Q7 622 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 TMPRSS11BQ86T26 416 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 THOC6Q86W42 341 aaKnown RBP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 RHOXF1Q8NHV9 184 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 TSEN34Q9BSV6 310 aaKnown RBP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 CENPOQ9BU64 300 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 KCNE1BA0A087WTH5 132 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 TRBV5-4A0A0C4DH59 114 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 TGFB1P01137 390 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 JUNDP17535 347 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 TGFBR2P37173 567 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 PFN3P60673 137 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 KCNC4Q03721 635 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 SRSF11Q05519 484 aaKnown RBP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 CDKN3Q16667 212 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 PROX2Q3B8N5 592 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 ARMCX4Q5H9R4 360 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 TPRG1LQ5T0D9 272 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 C11orf74Q86VG3 221 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 NFKBIDQ8NI38 313 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 UBTD2Q8WUN7 234 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 SORCS1Q8WY21 1168 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 GGHQ92820 318 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 CIDECQ96AQ7 238 aaPredicted RBP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 SAMD11Q96NU1 681 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 IL4I1Q96RQ9 567 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 CCNB1IP1Q9NPC3 277 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 LSM7Q9UK45 103 aaKnown RBP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 RAB23Q9ULC3 237 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 M0R082 166 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 OXSR1O95747 527 aaPredicted RBP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 PTHP01270 115 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 PPP5CP53041 499 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 RPS13P62277 151 aaKnown RBP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 SNRPD1P62314 119 aaKnown RBP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 ST3GAL4Q11206 333 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 EXOC3L2Q2M3D2 409 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 C6orf183Q5T699 404 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 OTOP2Q7RTS6 562 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 FAM217AQ8IXS0 508 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 RAVER1Q8IY67 606 aaKnown RBP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 LGI4Q8N135 537 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 VPS37AQ8NEZ2 397 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 ZNF675Q8TD23 568 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 ADAMTS19Q8TE59 1207 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 C2orf15Q8WU43 125 aaKnown RBP11.7□□□□□ -0.54
CLIP3-201ENST00000360535 ZNF566Q969W8 418 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 TPK1Q9H3S4 243 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 TMPRSS11EQ9UL52 423 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 PCDHB11Q9Y5F2 797 aa11.7□□□□□ -0.54
CLIP3-201ENST00000360535 PNMA8CA0A1B0GUJ8 204 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.69□□□□□ -0.54
CLIP3-201ENST00000360535 A6NL46 340 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 KPNA5O15131 536 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 SRCP12931 536 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 HLA-EP13747 358 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 GPX2P18283 190 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 FEN1P39748 380 aaKnown RBP11.69□□□□□ -0.54
CLIP3-201ENST00000360535 ETV3P41162 512 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 KCNJ10P78508 379 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 DAB2P98082 770 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 PPIGQ13427 754 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLIP3-201ENST00000360535 COL9A2Q14055 689 aaPredicted RBP11.69□□□□□ -0.54
CLIP3-201ENST00000360535 GPNMBQ14956 572 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 TMEM150AQ86TG1 271 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 MS4A12Q9NXJ0 267 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 CA12O43570 354 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 ZNF821O75541 412 aaPredicted RBP11.69□□□□□ -0.54
CLIP3-201ENST00000360535 DNAJB5O75953 348 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 C6orf47O95873 294 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 C8GP07360 202 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 ALOX5P09917 674 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 JUPP14923 745 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 EPHB3P54753 998 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 ELP6Q0PNE2 266 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 SELENBP1Q13228 472 aa11.69□□□□□ -0.54
CLIP3-201ENST00000360535 RGNQ15493 299 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms