RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 LRP4O75096 1905 aa8.82□□□□□ -1
USP4-202ENST00000351842 TMEM150CB9EJG8 249 aa8.82□□□□□ -1
USP4-202ENST00000351842 CD1CP29017 333 aa8.82□□□□□ -1
USP4-202ENST00000351842 ERFP50548 548 aa8.82□□□□□ -1
USP4-202ENST00000351842 MNAT1P51948 309 aa8.82□□□□□ -1
USP4-202ENST00000351842 PTGR1Q14914 329 aa8.82□□□□□ -1
USP4-202ENST00000351842 DNAJC14Q6Y2X3 702 aaPredicted RBP8.82□□□□□ -1
USP4-202ENST00000351842 AFAP1L2Q8N4X5 818 aa8.82□□□□□ -1
USP4-202ENST00000351842 RERGQ96A58 199 aaPredicted RBP8.82□□□□□ -1
USP4-202ENST00000351842 SLC24A3Q9HC58 644 aa8.82□□□□□ -1
USP4-202ENST00000351842 TCF7L2Q9NQB0 619 aa8.82□□□□□ -1
USP4-202ENST00000351842 KLHL14Q9P2G3 628 aa8.82□□□□□ -1
USP4-202ENST00000351842 SVILO95425 2214 aa8.82□□□□□ -1
USP4-202ENST00000351842 PLXND1Q9Y4D7 1925 aa8.82□□□□□ -1
USP4-202ENST00000351842 TEX51A0A1B0GUA7 166 aa8.82□□□□□ -1
USP4-202ENST00000351842 PRR19A6NJB7 356 aa8.82□□□□□ -1
USP4-202ENST00000351842 ZNF839A8K0R7 811 aa8.82□□□□□ -1
USP4-202ENST00000351842 MANBAO00462 879 aa8.82□□□□□ -1
USP4-202ENST00000351842 HDAC3O15379 428 aa8.82□□□□□ -1
USP4-202ENST00000351842 SNNO75324 88 aaPredicted RBP8.82□□□□□ -1
USP4-202ENST00000351842 CPNE6O95741 557 aa8.82□□□□□ -1
USP4-202ENST00000351842 CCL4P13236 92 aa8.82□□□□□ -1
USP4-202ENST00000351842 DNAJB13P59910 316 aa8.82□□□□□ -1
USP4-202ENST00000351842 ID2Q02363 134 aa8.82□□□□□ -1
USP4-202ENST00000351842 TRIP6Q15654 476 aaKnown RBP8.82□□□□□ -1
USP4-202ENST00000351842 FBXW10Q5XX13 1052 aa8.82□□□□□ -1
USP4-202ENST00000351842 SZRD1Q7Z422 152 aa8.82□□□□□ -1
USP4-202ENST00000351842 CACNA2D3Q8IZS8 1091 aa8.82□□□□□ -1
USP4-202ENST00000351842 C1orf52Q8N6N3 182 aaKnown RBP8.82□□□□□ -1
USP4-202ENST00000351842 OR8K5Q8NH50 307 aa8.82□□□□□ -1
USP4-202ENST00000351842 APIPQ96GX9 242 aa8.82□□□□□ -1
USP4-202ENST00000351842 EGLN2Q96KS0 407 aa8.82□□□□□ -1
USP4-202ENST00000351842 ZNF382Q96SR6 550 aa8.82□□□□□ -1
USP4-202ENST00000351842 HAUS8Q9BT25 410 aa8.82□□□□□ -1
USP4-202ENST00000351842 SGPP1Q9BX95 441 aa8.82□□□□□ -1
USP4-202ENST00000351842 AKTIPQ9H8T0 292 aa8.82□□□□□ -1
USP4-202ENST00000351842 IL1RL2Q9HB29 575 aa8.82□□□□□ -1
USP4-202ENST00000351842 CCDC167Q9P0B6 97 aa8.82□□□□□ -1
USP4-202ENST00000351842 FBXW2Q9UKT8 454 aa8.82□□□□□ -1
USP4-202ENST00000351842 APOBEC2Q9Y235 224 aaKnown RBP8.82□□□□□ -1
USP4-202ENST00000351842 MRPS2Q9Y399 296 aaKnown RBP8.82□□□□□ -1
USP4-202ENST00000351842 LY6G6EA0A0G2JKS1 128 aa8.81□□□□□ -1
USP4-202ENST00000351842 EME2A4GXA9 379 aaPredicted RBP8.81□□□□□ -1
USP4-202ENST00000351842 MAP3K7O43318 606 aa8.81□□□□□ -1
USP4-202ENST00000351842 NPHS1O60500 1241 aa8.81□□□□□ -1
USP4-202ENST00000351842 WFS1O76024 890 aa8.81□□□□□ -1
USP4-202ENST00000351842 SLC34A2O95436 690 aa8.81□□□□□ -1
USP4-202ENST00000351842 KLK1P06870 262 aa8.81□□□□□ -1
USP4-202ENST00000351842 FOLR1P15328 257 aa8.81□□□□□ -1
USP4-202ENST00000351842 CKMT2P17540 419 aa8.81□□□□□ -1
USP4-202ENST00000351842 MAT1AQ00266 395 aaKnown RBP8.81□□□□□ -1
USP4-202ENST00000351842 ERV3-1Q14264 604 aa8.81□□□□□ -1
USP4-202ENST00000351842 CSRP2Q16527 193 aa8.81□□□□□ -1
USP4-202ENST00000351842 SPRED3Q2MJR0 410 aa8.81□□□□□ -1
USP4-202ENST00000351842 LSM12Q3MHD2 195 aaKnown RBP8.81□□□□□ -1
USP4-202ENST00000351842 RFTN2Q52LD8 501 aaPredicted RBP8.81□□□□□ -1
USP4-202ENST00000351842 C3orf38Q5JPI3 329 aa8.81□□□□□ -1
USP4-202ENST00000351842 PAGE2BQ5JRK9 111 aa8.81□□□□□ -1
USP4-202ENST00000351842 WLSQ5T9L3 541 aa8.81□□□□□ -1
USP4-202ENST00000351842 LRRC56Q8IYG6 542 aaPredicted RBP8.81□□□□□ -1
USP4-202ENST00000351842 MMP21Q8N119 569 aa8.81□□□□□ -1
USP4-202ENST00000351842 ZDHHC12Q96GR4 267 aa8.81□□□□□ -1
USP4-202ENST00000351842 OR6C1Q96RD1 312 aa8.81□□□□□ -1
USP4-202ENST00000351842 RAB11FIP5Q9BXF6 653 aa8.81□□□□□ -1
USP4-202ENST00000351842 ACPTQ9BZG2 426 aa8.81□□□□□ -1
USP4-202ENST00000351842 SNX6Q9UNH7 406 aa8.81□□□□□ -1
USP4-202ENST00000351842 U3KQA8 63 aa8.81□□□□□ -1
USP4-202ENST00000351842 TMEM114B3SHH9 223 aa8.81□□□□□ -1
USP4-202ENST00000351842 H0YGG7 62 aa8.81□□□□□ -1
USP4-202ENST00000351842 P2RX6O15547 441 aa8.81□□□□□ -1
USP4-202ENST00000351842 FLRT2O43155 660 aa8.81□□□□□ -1
USP4-202ENST00000351842 KLK8O60259 260 aa8.81□□□□□ -1
USP4-202ENST00000351842 MGRN1O60291 552 aa8.81□□□□□ -1
USP4-202ENST00000351842 SSR2P43308 183 aa8.81□□□□□ -1
USP4-202ENST00000351842 IDH3AP50213 366 aa8.81□□□□□ -1
USP4-202ENST00000351842 SLC18A1P54219 525 aa8.81□□□□□ -1
USP4-202ENST00000351842 ARF3P61204 181 aaPredicted RBP8.81□□□□□ -1
USP4-202ENST00000351842 ACSM2AQ08AH3 577 aa8.81□□□□□ -1
USP4-202ENST00000351842 ILF2Q12905 390 aaKnown RBP8.81□□□□□ -1
USP4-202ENST00000351842 SYT16Q17RD7 645 aa8.81□□□□□ -1
USP4-202ENST00000351842 ATP6AP1LQ52LC2 224 aa8.81□□□□□ -1
USP4-202ENST00000351842 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.81□□□□□ -1
USP4-202ENST00000351842 ACSM2BQ68CK6 577 aa8.81□□□□□ -1
USP4-202ENST00000351842 ZNF574Q6ZN55 896 aaPredicted RBP8.81□□□□□ -1
USP4-202ENST00000351842 TTLL10Q6ZVT0 673 aa8.81□□□□□ -1
USP4-202ENST00000351842 PLXDC1Q8IUK5 500 aa8.81□□□□□ -1
USP4-202ENST00000351842 KRT78Q8N1N4 520 aa8.81□□□□□ -1
USP4-202ENST00000351842 EFCAB3Q8N7B9 438 aa8.81□□□□□ -1
USP4-202ENST00000351842 AMER3Q8N944 861 aa8.81□□□□□ -1
USP4-202ENST00000351842 OR5T3Q8NGG3 340 aa8.81□□□□□ -1
USP4-202ENST00000351842 SLC22A18Q96BI1 424 aa8.81□□□□□ -1
USP4-202ENST00000351842 LOXL4Q96JB6 756 aa8.81□□□□□ -1
USP4-202ENST00000351842 CCDC74BQ96LY2 380 aa8.81□□□□□ -1
USP4-202ENST00000351842 SPRTNQ9H040 489 aaPredicted RBP8.81□□□□□ -1
USP4-202ENST00000351842 LRRN3Q9H3W5 708 aa8.81□□□□□ -1
USP4-202ENST00000351842 A0A0J9YY10 115 aa8.8□□□□□ -1
USP4-202ENST00000351842 UROSP10746 265 aa8.8□□□□□ -1
USP4-202ENST00000351842 CSTF2P33240 577 aaKnown RBP eCLIP8.8□□□□□ -1
USP4-202ENST00000351842 OR1D4P47884 311 aa8.8□□□□□ -1
USP4-202ENST00000351842 BTN3A2P78410 334 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms