RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 HOXA9P31269 272 aa18.64■□□□□ 0.57
COL9A3-201ENST00000343916 CRYBA2P53672 197 aa18.64■□□□□ 0.57
COL9A3-201ENST00000343916 RAD23AP54725 363 aa18.64■□□□□ 0.57
COL9A3-201ENST00000343916 SLBPQ14493 270 aaKnown RBP eCLIP18.64■□□□□ 0.57
COL9A3-201ENST00000343916 CAPN13Q6MZZ7 669 aaPredicted RBP18.64■□□□□ 0.57
COL9A3-201ENST00000343916 ANGPTL8Q6UXH0 198 aa18.64■□□□□ 0.57
COL9A3-201ENST00000343916 NRSN1Q8IZ57 195 aa18.64■□□□□ 0.57
COL9A3-201ENST00000343916 C2orf73Q8N5S3 287 aaPredicted RBP18.64■□□□□ 0.57
COL9A3-201ENST00000343916 CELF5Q8N6W0 485 aaKnown RBP18.64■□□□□ 0.57
COL9A3-201ENST00000343916 NUS1Q96E22 293 aa18.64■□□□□ 0.57
COL9A3-201ENST00000343916 RIBC2Q9H4K1 309 aa18.64■□□□□ 0.57
COL9A3-201ENST00000343916 PAK1IP1Q9NWT1 392 aaPredicted RBP18.64■□□□□ 0.57
COL9A3-201ENST00000343916 PCYT1BQ9Y5K3 369 aaPredicted RBP18.64■□□□□ 0.57
COL9A3-201ENST00000343916 C1orf226A1L170 272 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 PRNPP04156 253 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 PCSK2P16519 638 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 TIA1P31483 386 aaKnown RBP eCLIP18.63■□□□□ 0.57
COL9A3-201ENST00000343916 HNRNPFP52597 415 aaKnown RBP18.63■□□□□ 0.57
COL9A3-201ENST00000343916 IL5RAQ01344 420 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 MC1RQ01726 317 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 NFE2L1Q14494 772 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 SKIV2LQ15477 1246 aaKnown RBP18.63■□□□□ 0.57
COL9A3-201ENST00000343916 C9orf64Q5T6V5 341 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 NPAS3Q8IXF0 933 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 HCAR2Q8TDS4 363 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 TUBA1CQ9BQE3 449 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 OR51B5Q9H339 312 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 RPS6KA6Q9UK32 745 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 SLC1A7O00341 560 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 SEMG1P04279 462 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 HNRNPA1P09651 372 aaKnown RBP eCLIP18.63■□□□□ 0.57
COL9A3-201ENST00000343916 MYOGP15173 224 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 EPHA2P29317 976 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 ASMTP46597 345 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 LBX1P52954 281 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 C21orf58P58505 322 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 SPIN4Q56A73 249 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 ZNF852Q6ZMS4 543 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 CBLL1Q75N03 491 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 ARMCX6Q7L4S7 300 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 CROCCP3Q8IVE0 287 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 RBM12BQ8IXT5 1001 aaKnown RBP18.63■□□□□ 0.57
COL9A3-201ENST00000343916 KLHDC8AQ8IYD2 350 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 NAGSQ8N159 534 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 SYNPOQ8N3V7 929 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 SMYD1Q8NB12 490 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 ZNF740Q8NDX6 193 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 PIK3C3Q8NEB9 887 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 SP7Q8TDD2 431 aaPredicted RBP18.63■□□□□ 0.57
COL9A3-201ENST00000343916 NRTNQ99748 197 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 DGCR6LQ9BY27 220 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 PDP1Q9P0J1 537 aaPredicted RBP18.63■□□□□ 0.57
COL9A3-201ENST00000343916 RAPGEFL1Q9UHV5 662 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 CDH7Q9ULB5 785 aa18.63■□□□□ 0.57
COL9A3-201ENST00000343916 PSMD11O00231 422 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 SEC14L2O76054 403 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 ADH1CP00326 375 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 ZNF182P17025 639 aaPredicted RBP18.62■□□□□ 0.57
COL9A3-201ENST00000343916 PCDH1Q08174 1060 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 RGNQ15493 299 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 ERICH5Q6P6B1 374 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 HORMAD1Q86X24 394 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 OR4A15Q8NGL6 344 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 IL17FQ96PD4 163 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 TM9SF3Q9HD45 589 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 SAMHD1Q9Y3Z3 626 aaKnown RBP18.62■□□□□ 0.57
COL9A3-201ENST00000343916 REV3LO60673 3130 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 BOLA2-SMG1P6H3BVE0 249 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 SLC16A6O15403 523 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 LZTS3O60299 673 aaPredicted RBP18.62■□□□□ 0.57
COL9A3-201ENST00000343916 JUNBP17275 347 aaPredicted RBP18.62■□□□□ 0.57
COL9A3-201ENST00000343916 TAP2Q03519 686 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 TMEM240Q5SV17 173 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 TMC5Q6UXY8 1006 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 EIF3MQ7L2H7 374 aaKnown RBP18.62■□□□□ 0.57
COL9A3-201ENST00000343916 COMMD6Q7Z4G1 85 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 ETFBKMTQ8IXQ9 262 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 PGBD3Q8N328 593 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 VPS37AQ8NEZ2 397 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 ZFP90Q8TF47 636 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 THAP11Q96EK4 314 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 CCDC90BQ9GZT6 254 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 CHST8Q9H2A9 424 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 FAIMQ9NVQ4 179 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 BAG5Q9UL15 447 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 PLAGL1Q9UM63 463 aa18.62■□□□□ 0.57
COL9A3-201ENST00000343916 PIPSLA2A3N6 862 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 LINC01553A4QN01 128 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 HOXC11O43248 304 aaPredicted RBP18.61■□□□□ 0.57
COL9A3-201ENST00000343916 ADRB3P13945 408 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 ZNF8P17098 575 aaPredicted RBP18.61■□□□□ 0.57
COL9A3-201ENST00000343916 NR4A1P22736 598 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 ITGB7P26010 798 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 GSTM2P28161 218 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 HPCAL1P37235 193 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 ARHGDIAP52565 204 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 PLA2G16P53816 162 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 HBA1P69905 142 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 CDK5R2Q13319 367 aa18.61■□□□□ 0.57
COL9A3-201ENST00000343916 Q6ZNX1 250 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms