RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PCDHGA8Q9Y5G5 932 aa21.17■□□□□ 0.98
SDC3-202ENST00000339394 ANKDD1BA6NHY2 528 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 KLF11O14901 512 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 P2RX6O15547 441 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 NDUFS4O43181 175 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 SNNO75324 88 aaPredicted RBP21.16■□□□□ 0.98
SDC3-202ENST00000339394 ENO1P06733 434 aaKnown RBP21.16■□□□□ 0.98
SDC3-202ENST00000339394 GSTM2P28161 218 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 NEK2P51955 445 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 CAMK2BQ13554 666 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 HKDC1Q2TB90 917 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 FRG2Q64ET8 278 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 TTC19Q6DKK2 380 aaPredicted RBP21.16■□□□□ 0.98
SDC3-202ENST00000339394 GPR135Q8IZ08 494 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 TRPV3Q8NET8 790 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 OR8K5Q8NH50 307 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 HUS1BQ8NHY5 278 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 CREB3L4Q8TEY5 395 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 CKAP2Q8WWK9 683 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 REPS1Q96D71 796 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 SEC16BQ96JE7 1060 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 FRG2BQ96QU4 278 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 SORT1Q99523 831 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 POLR1BQ9H9Y6 1135 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 ENAMQ9NRM1 1142 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 THAP1Q9NVV9 213 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 ZDHHC2Q9UIJ5 367 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 TSC22D4Q9Y3Q8 395 aa21.16■□□□□ 0.98
SDC3-202ENST00000339394 SERPIND1P05546 499 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 RAB15P59190 212 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 TCHHL1Q5QJ38 904 aaPredicted RBP21.15■□□□□ 0.98
SDC3-202ENST00000339394 DCAF12Q5T6F0 453 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 PRAMEF17Q5VTA0 474 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 CLEC6AQ6EIG7 209 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 RNF175Q8N4F7 328 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 CAMKVQ8NCB2 501 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 LRRC8CQ8TDW0 803 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 ZNF473Q8WTR7 871 aaKnown RBP21.15■□□□□ 0.98
SDC3-202ENST00000339394 MTFMTQ96DP5 389 aaKnown RBP21.15■□□□□ 0.98
SDC3-202ENST00000339394 TAAR9Q96RI9 348 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 MTERF1Q99551 399 aaKnown RBP21.15■□□□□ 0.98
SDC3-202ENST00000339394 SCNM1Q9BWG6 230 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 SLC29A3Q9BZD2 475 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 ELOVL6Q9H5J4 265 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 SNX6Q9UNH7 406 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 HEATR5BQ9P2D3 2071 aa21.15■□□□□ 0.98
SDC3-202ENST00000339394 FITM1A5D6W6 292 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 ZSCAN9O15535 394 aaPredicted RBP21.14■□□□□ 0.98
SDC3-202ENST00000339394 CRCPO75575 148 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 SNUPNO95149 360 aaKnown RBP21.14■□□□□ 0.98
SDC3-202ENST00000339394 TIAF1O95411 115 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 TBX6O95947 436 aaPredicted RBP21.14■□□□□ 0.98
SDC3-202ENST00000339394 FGF4P08620 206 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 SLC35G6P0C7Q6 338 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 UROSP10746 265 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 SPINK2P20155 84 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 SERPINB3P29508 390 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 HMOX2P30519 316 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 GABREP78334 506 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 IFT88Q13099 833 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 PWP1Q13610 501 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 DDX39BQ13838 428 aaKnown RBP21.14■□□□□ 0.98
SDC3-202ENST00000339394 COL9A2Q14055 689 aaPredicted RBP21.14■□□□□ 0.98
SDC3-202ENST00000339394 PRTGQ2VWP7 1150 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 LARP7Q4G0J3 582 aaKnown RBP eCLIP21.14■□□□□ 0.98
SDC3-202ENST00000339394 SH2D4BQ5SQS7 431 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 PWWP2BQ6NUJ5 590 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 ZNF655Q8N720 491 aaPredicted RBP21.14■□□□□ 0.98
SDC3-202ENST00000339394 AGR3Q8TD06 166 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 MAGEB18Q96M61 343 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 FARSBQ9NSD9 589 aaKnown RBP21.14■□□□□ 0.98
SDC3-202ENST00000339394 RUVBL1Q9Y265 456 aaKnown RBP21.14■□□□□ 0.98
SDC3-202ENST00000339394 TRAF6Q9Y4K3 522 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 B3GALT1Q9Y5Z6 326 aa21.14■□□□□ 0.98
SDC3-202ENST00000339394 TMEM233B4DJY2 109 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 TXNDC9O14530 226 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 AZIN1O14977 448 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 ULK1O75385 1050 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 CLEC3AO75596 197 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 TNFSF15O95150 251 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 KRT6AP02538 564 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 KRT6BP04259 564 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 PIK3CBP42338 1070 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 KRT6CP48668 564 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 SGO1Q5FBB7 561 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 MANEAQ5SRI9 462 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 TLDC1Q6P9B6 456 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 CEACAM20Q6UY09 585 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 CLYBLQ8N0X4 340 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 ZNF781Q8N8C0 355 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 KCT2Q8NC54 265 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 CCT6BQ92526 530 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 USP7Q93009 1102 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 ASPSCR1Q9BZE9 553 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 NRSN2Q9GZP1 204 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 ILKAPQ9H0C8 392 aaPredicted RBP21.14■□□□□ 0.97
SDC3-202ENST00000339394 PRM3Q9NNZ6 103 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 FAM53CQ9NYF3 392 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 ADGRE2Q9UHX3 823 aa21.14■□□□□ 0.97
SDC3-202ENST00000339394 RAP2CQ9Y3L5 183 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms