RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ZIM3Q96PE6 472 aa15.14■□□□□ 0.01
CCDC28A-201ENST00000332797 EFCAB11Q9BUY7 163 aa15.14■□□□□ 0.01
CCDC28A-201ENST00000332797 IFT80Q9P2H3 777 aaPredicted RBP15.14■□□□□ 0.01
CCDC28A-201ENST00000332797 GPN3Q9UHW5 284 aaPredicted RBP15.14■□□□□ 0.01
CCDC28A-201ENST00000332797 ZFP69BQ9UJL9 534 aa15.14■□□□□ 0.01
CCDC28A-201ENST00000332797 KCND3Q9UK17 655 aa15.14■□□□□ 0.01
CCDC28A-201ENST00000332797 EMCNQ9ULC0 261 aa15.14■□□□□ 0.01
CCDC28A-201ENST00000332797 MAU2Q9Y6X3 613 aa15.14■□□□□ 0.01
CCDC28A-201ENST00000332797 E2F3O00716 465 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 CAPN1P07384 714 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 CD22P20273 847 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 AHRP35869 848 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 OR1D4P47884 311 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 PIK3CGP48736 1102 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 RPS18P62269 152 aaKnown RBP15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 NFKB2Q00653 900 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 SLC18A2Q05940 514 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 VAC14Q08AM6 782 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 NCF4Q15080 339 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 NDUFA9Q16795 377 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 PAGE2BQ5JRK9 111 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 BEND6Q5SZJ8 279 aaPredicted RBP15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 CEP85LQ5SZL2 805 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 ARHGAP40Q5TG30 622 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 MLIPQ5VWP3 458 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 METTL2BQ6P1Q9 378 aaKnown RBP15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 IQCKQ8N0W5 287 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 ARHGEF39Q8N4T4 335 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 KCT2Q8NC54 265 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 WDR34Q96EX3 536 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 SLC45A3Q96JT2 553 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 C17orf62Q9BQA9 187 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 GPR87Q9BY21 358 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 DRC3Q9H069 523 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 ACTL8Q9H568 366 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 IPPKQ9H8X2 491 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 PRM3Q9NNZ6 103 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 PCTPQ9UKL6 214 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 GRID1Q9ULK0 1009 aa15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 FARSAQ9Y285 508 aaKnown RBP15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 MRPS2Q9Y399 296 aaKnown RBP15.13■□□□□ 0.01
CCDC28A-201ENST00000332797 ZNF891A8MT65 544 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 K7ENP7 123 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 RGS16O15492 202 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 DLX3O60479 287 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 RPS17P08708 135 aaKnown RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 RAB40ALP0C0E4 278 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 ATP5F1P24539 256 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 PTPN4P29074 926 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 RGS1Q08116 209 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 LAPTM5Q13571 262 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 PWP1Q13610 501 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 TBCCQ15814 346 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 HIST2H2ACQ16777 129 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 CCDC153Q494R4 210 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 HIST2H2AA3Q6FI13 130 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 TMEM214Q6NUQ4 689 aaKnown RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 PRMT9Q6P2P2 845 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 INO80CQ6PI98 192 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 MYLK4Q86YV6 388 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 CCDC63Q8NA47 563 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 TRPV3Q8NET8 790 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 NT5CQ8TCD5 201 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 CCT6BQ92526 530 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 COL26A1Q96A83 441 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 APOPT1Q96IL0 206 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 NSUN5Q96P11 429 aaKnown RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 PITHD1Q9GZP4 211 aaPredicted RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 IQCGQ9H095 443 aaKnown RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 C12orf65Q9H3J6 166 aaKnown RBP15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 CENPHQ9H3R5 247 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 ACTR8Q9H981 624 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 ZNF304Q9HCX3 659 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 SLC22A11Q9NSA0 550 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 PCDHGA6Q9Y5G7 932 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 FER1L5A0AVI2 2057 aa15.12■□□□□ 0.01
CCDC28A-201ENST00000332797 A0A0A6YYC8 382 aaPredicted RBP15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 I3L1I5 382 aaPredicted RBP15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 CTIFO43310 598 aaKnown RBP15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 FOXS1O43638 330 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 PLIN3O60664 434 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 WFS1O76024 890 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 PROCP04070 461 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 PRKAR1AP10644 381 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 MYL2P10916 166 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 PIM1P11309 404 aaPredicted RBP15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 FBLP22087 321 aaKnown RBP15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 ARL1P40616 181 aaPredicted RBP15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 CASP2P42575 452 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 HERVK_113P63132 956 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 SNRPNP63162 240 aaKnown RBP15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 FAM69BQ5VUD6 431 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 LRIG3Q6UXM1 1119 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 RPS27LQ71UM5 84 aaKnown RBP15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 COX15Q7KZN9 410 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 BANPQ8N9N5 519 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 TTLQ8NG68 377 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 ATP6V1E2Q96A05 226 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 MVB12AQ96EY5 273 aa15.11■□□□□ 0.01
CCDC28A-201ENST00000332797 MMABQ96EY8 250 aaPredicted RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms