RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 UBQLN4Q9NRR5 601 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 FAM53CQ9NYF3 392 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 TAS2R16Q9NYV7 291 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 PURGQ9UJV8 347 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 FBXW2Q9UKT8 454 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 STXBP5LQ9Y2K9 1186 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 UBE2J1Q9Y385 318 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 PCDHA3Q9Y5H8 950 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ADGRG1Q9Y653 693 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 RPS6KL1Q9Y6S9 549 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 RPTORQ8N122 1335 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ANKRD50Q9ULJ7 1429 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 AGAP14A8MT82 685 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 TAF5LO75529 589 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 LGI1O95970 557 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 CD48P09326 243 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 AMD1P17707 334 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 RPS12P25398 132 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 CD1CP29017 333 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 TAGLN2P37802 199 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 IL15P40933 162 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 PCP4P48539 62 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 HARS2P49590 506 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 CAV2P51636 162 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ADIRFQ15847 76 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 IQCJQ1A5X6 159 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 Q3ZCU0 254 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 RAET1LQ5VY80 246 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 GPAT2Q6NUI2 795 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 C10orf126Q8N4M7 172 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 PLD5Q8N7P1 536 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF676Q8N7Q3 588 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 OR56B4Q8NH76 319 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ACTL9Q8TC94 416 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 RFFLQ8WZ73 363 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ISG20Q96AZ6 181 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 CRISPLD2Q9H0B8 497 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ZDHHC6Q9H6R6 413 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 SSUH2Q9Y2M2 353 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 A8MX80 341 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 GPAA1O43292 621 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF749O43361 778 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 BPIP17213 487 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 IVDP26440 423 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 DPP4P27487 766 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 PBX1P40424 430 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 CD86P42081 329 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 RPL11P62913 178 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 GLO1Q04760 184 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ABRAXAS2Q15018 415 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 DHRS13Q6UX07 377 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 HACD2Q6Y1H2 254 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 RFPL4BQ6ZWI9 263 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 FAM109AQ8N4B1 249 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 FIBCD1Q8N539 461 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 NHLRC2Q8NBF2 726 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 DCUN1D4Q92564 292 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 EXTL1Q92935 676 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 NUDT16Q96DE0 195 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF512Q96ME7 567 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 URGCP-MRPS24S4R325 110 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 TCP10L2B9ZVM9 353 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF701M0R085 212 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 OPLAHO14841 1288 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ERAL1O75616 437 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 AGR2O95994 175 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ERCC1P07992 297 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 TPBGLP0DKB5 382 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 GCSHP23434 173 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 DNASE1P24855 282 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 RAD52P43351 418 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 FXNQ16595 210 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 SEZ6Q53EL9 994 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 TIGD5Q53EQ6 642 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 LYSMD2Q8IV50 215 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 OR4F5Q8NH21 305 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 TNFRSF14Q92956 283 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 SGCZQ96LD1 299 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 CASD1Q96PB1 797 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 OR4F4Q96R69 305 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 TRIB1Q96RU8 372 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 DBNDD2Q9BQY9 259 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 MIR1-1HGQ9H1L0 117 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ESRP2Q9H6T0 727 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ZFR2Q9UPR6 939 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 SYNMO15061 1565 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 ITSN2Q9NZM3 1697 aa7.43□□□□□ -1.22
LIMCH1-201ENST00000313860 A0A0D9SG52 128 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 UTS2O95399 124 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 C8orf89P0DMQ9 161 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 CHRNB2P17787 502 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 HDCP19113 662 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PTBP1P26599 531 aaKnown RBP eCLIP7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 LAP3P28838 519 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PLK1P53350 603 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 MVKQ03426 396 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 GAD2Q05329 585 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 DESI1Q6ICB0 168 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 SLC35D2Q76EJ3 337 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms