RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 H3BSA7 217 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 APOC3P02656 99 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 HMGN1P05114 100 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 IVDP26440 423 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 DNAJB13P59910 316 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 ERVK-8P63133 956 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 GALNT2Q10471 571 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 ATAD1Q8NBU5 361 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 RIT1Q92963 219 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 ZNF225Q9UK10 706 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 FBXW2Q9UKT8 454 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 ARFGEF1Q9Y6D6 1849 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 PCDHGA12O60330 932 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 FGF3P11487 239 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-201ENST00000295550 PTGER3P43115 390 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 SLC3A1Q07837 685 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 SLC13A2Q13183 592 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 CRB2Q5IJ48 1285 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 MOB2Q70IA6 237 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 DRAXINQ8NBI3 349 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-201ENST00000295550 SLC13A3Q8WWT9 602 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 CPNE2Q96FN4 548 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-201ENST00000295550 SLC35A5Q9BS91 424 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 MINDY3Q9H8M7 445 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 VRTNQ9H8Y1 702 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 ENAMQ9NRM1 1142 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 FLRT1Q9NZU1 646 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 TBC1D14Q9P2M4 693 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 SIX4Q9UIU6 781 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 GNAZP19086 355 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 MAGEA8P43361 318 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 BATFQ16520 125 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 ZNF181Q2M3W8 571 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 SNAP47Q5SQN1 464 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 CAMK1GQ96NX5 476 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 OR52B2Q96RD2 323 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 MTERF1Q99551 399 aaKnown RBP9.59□□□□□ -0.87
COL6A3-201ENST00000295550 PCDHGB5Q9Y5G0 923 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 PCDHGA8Q9Y5G5 932 aa9.59□□□□□ -0.87
COL6A3-201ENST00000295550 SLC35F4A4IF30 521 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 FBP2O00757 339 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 DLX3O60479 287 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 UBXN7O94888 489 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 IL7RP16871 459 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 SCARB2Q14108 478 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 DAG1Q14118 895 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 SYT16Q17RD7 645 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF404Q494X3 552 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 CCDC58Q4VC31 144 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 KIAA1324Q6UXG2 1013 aaKnown RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 NXPE1Q8N323 547 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 BEND7Q8N7W2 519 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 OR10G2Q8NGC3 310 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 GRHL3Q8TE85 626 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 TIFAQ96CG3 184 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 GAL3ST4Q96RP7 486 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 AMBNQ9NP70 447 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 ARL5AQ9Y689 179 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 TEX13DA0A0J9YY54 714 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 TREHO43280 583 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 ALDOAP04075 364 aaKnown RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 NT5EP21589 574 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 CD72P21854 359 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 SPAM1P38567 509 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 HERV-K104P61576 105 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 SIGLEC10Q96LC7 697 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 SLC16A8O95907 504 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 C8BP07358 591 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 NCBP2P52298 156 aaKnown RBP eCLIP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 TAS2R39P59534 338 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 BTG3Q14201 252 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 MAD2L1BPQ15013 274 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 PRAMEF19Q5SWL8 479 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 STEAP4Q687X5 459 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 ESX1Q8N693 406 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 SMG8Q8ND04 991 aaKnown RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 LIN37Q96GY3 246 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 C7orf50Q9BRJ6 194 aaKnown RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 USP29Q9HBJ7 922 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 PCDHGB6Q9Y5F9 930 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 MAPK3P27361 379 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 GRIA1P42261 906 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 CDKN2CP42773 168 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 PSMA6P60900 246 aaKnown RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 HNRNPA0Q13151 305 aaKnown RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 MED27Q6P2C8 311 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 HTATIP2Q9BUP3 242 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 COLEC10Q9Y6Z7 277 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 A8MT66 165 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 H0YJX3 145 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 INSIG1O15503 277 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 RPP14O95059 124 aaKnown RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 RPS3AP61247 264 aaKnown RBP9.58□□□□□ -0.88
COL6A3-201ENST00000295550 MVKQ03426 396 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 CDK10Q15131 360 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 PON2Q15165 354 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 KRBOX4Q5JUW0 171 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF101Q8IZC7 436 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 SLC22A15Q8IZD6 547 aa9.58□□□□□ -0.88
COL6A3-201ENST00000295550 C2orf73Q8N5S3 287 aaPredicted RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms