RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 FAF1Q9UNN5 650 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 RANBP2P49792 3224 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 C1orf226A1L170 272 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 SLC16A6O15403 523 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 SEMG1P04279 462 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 C6P13671 934 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 HSD3B1P14060 373 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 HSD3B2P26439 372 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 ASMTP46597 345 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 CLK3P49761 638 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 RGNQ15493 299 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 SPIN4Q56A73 249 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 ERICH5Q6P6B1 374 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 DHRS4L2Q6PKH6 230 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 EIF3MQ7L2H7 374 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 ZNF547Q8IVP9 402 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 NRSN1Q8IZ57 195 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 VPS37AQ8NEZ2 397 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 WDR48Q8TAF3 677 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 HSPBAP1Q96EW2 488 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 CSF3RQ99062 836 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 PCYT1BQ9Y5K3 369 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 LZTS3O60299 673 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 OPN1SWP03999 348 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 ZNF8P17098 575 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 HPCAL1P37235 193 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 COX20Q5RI15 118 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 C9orf64Q5T6V5 341 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 FAM180BQ6P0A1 224 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 ARMCX6Q7L4S7 300 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 CELF5Q8N6W0 485 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 ZFP90Q8TF47 636 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 TANKQ92844 425 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 CIDECQ96AQ7 238 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 ZNF707Q96C28 371 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 PREBQ9HCU5 417 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 TMEM98Q9Y2Y6 226 aa17.66■□□□□ 0.42
SHKBP1-201ENST00000291842 INMTO95050 263 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 PRNPP04156 253 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 MYOGP15173 224 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 CCNA2P20248 432 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 TNFRSF1BP20333 461 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 DNAJA1P31689 397 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 CRATP43155 626 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 HNRNPFP52597 415 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 HBA1P69905 142 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 GRSF1Q12849 480 aaKnown RBP eCLIP17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 NFATC3Q12968 1075 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 GTF2IRD2BQ6EKJ0 949 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 LAIR1Q6GTX8 287 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 COMMD6Q7Z4G1 85 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 GTF2IRD2Q86UP8 949 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 EZH1Q92800 747 aaPredicted RBP17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 NRBF2Q96F24 287 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 NODALQ96S42 347 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 RHNO1Q9BSD3 238 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 ACAT2Q9BWD1 397 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 TMEM121BQ9BXQ6 578 aaPredicted RBP17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 ASPSCR1Q9BZE9 553 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 CHST8Q9H2A9 424 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 SIRT5Q9NXA8 310 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 BLOC1S6Q9UL45 172 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 DYRK1BQ9Y463 629 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 A0A0J9YVX5 310 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 ZNF197O14709 1029 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 POP7O75817 140 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 ANGPTL1O95841 491 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 PCSK2P16519 638 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 C21orf58P58505 322 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 RFX4Q33E94 735 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 KDM4DQ6B0I6 523 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 CACUL1Q86Y37 369 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 KLHDC8AQ8IYD2 350 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 PGBD3Q8N328 593 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 ATG16L2Q8NAA4 619 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 HCAR2Q8TDS4 363 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 UBE2FQ969M7 185 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 COQ8BQ96D53 544 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 KIF17Q9P2E2 1029 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 BTNL2Q9UIR0 455 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 ACSL6Q9UKU0 697 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 SNX5Q9Y5X3 404 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 DGKBQ9Y6T7 804 aa17.65■□□□□ 0.42
SHKBP1-201ENST00000291842 PIPSLA2A3N6 862 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 AXIN1O15169 862 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 ADH1CP00326 375 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 ITGAMP11215 1152 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 ETFAP13804 333 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 FPR1P21462 350 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 RYKP34925 604 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 TAP2Q03519 686 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 SMN1Q16637 294 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 ANKDD1AQ495B1 522 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 KLHL35Q6PF15 583 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 TMC5Q6UXY8 1006 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 FAM83HQ6ZRV2 1179 aaPredicted RBP17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 TERB1Q8NA31 727 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 OR9A1PQ8NGU1 263 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 OR5AK3PQ8NH89 298 aa17.64■□□□□ 0.41
SHKBP1-201ENST00000291842 TBC1D15Q8TC07 691 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms